PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017657m
Common NameCICLE_v10017657mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 337aa    MW: 38679.5 Da    PI: 7.1807
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017657mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.32.2e-2288147357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t+eql +Lee++++ +r+psae+++++A++l    +++ ++V++WFqN++a+e++
  Ciclev10017657m  88 SRWNPTPEQLLALEEMYRRgTRTPSAEQIQHIASQLrrfgKIEGKNVFYWFQNHKARERQ 147
                      7*****************99**************************************97 PP
2Wus_type_Homeobox1123.2e-3687149365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+  Lee+y++G+rtP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
    Ciclev10017657m  87 SSRWNPTPEQLLALEEMYRRGTRTPSAEQIQHIASQLRRFGKIEGKNVFYWFQNHKARERQKR 149
                        68***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-1383150IPR009057Homeodomain-like
PROSITE profilePS5007111.64583148IPR001356Homeobox domain
SMARTSM003892.0E-685152IPR001356Homeobox domain
PfamPF000466.0E-2088147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-1088147IPR009057Homeodomain-like
CDDcd000867.84E-689143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSVTRDNQLH NIPADHNSSS GTVTRPLIQN PNAAFSPKNT NISEVPSYYD FTSENTNLLP  60
LNHHLADIAP DHAKSRVSEF NEQPLGSSRW NPTPEQLLAL EEMYRRGTRT PSAEQIQHIA  120
SQLRRFGKIE GKNVFYWFQN HKARERQKRR RRESETNNSH QQKPHNTNHN IPGDKKDSGL  180
RRTSYDLGQT KNWAPSSYSE EFVSMYRAEN TSCGPQYGWT QFDGRELQQG KSSTNITEAA  240
EFMNATWHKM EYKKLLKTDD QNLSGFSLLD MKPYQQENEE TKTLELFPLH RDDDDDGNSV  300
NATKKDNNKV PITAINDTNN FTPSTSQYIE FLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448244.10.0WUSCHEL-related homeobox 6
TrEMBLV4W5W50.0V4W5W5_9ROSI; Uncharacterized protein
STRINGXP_006448244.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.17e-29WUSCHEL related homeobox 1