PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10017618m | ||||||||
Common Name | CICLE_v10017618mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 39302.7 Da PI: 6.7164 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.7 | 1.2e-45 | 51 | 178 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+G+rF P d+el+v+yLkkk+ +++l+ + i++v++y+++P+dL + ++++eke yfF++rd+ky++g+r+nra+ +gyWkatg dk++ Ciclev10017618m 51 PAGYRFCPFDSELIVYYLKKKIMNERLPP-NRINDVNLYQFNPHDLAEmykGCAEKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSI 143 89************************999.77**************85233334478899********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg kktLvfy+g+ pkg kt W+mheyr+ Ciclev10017618m 144 KH-NGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRV 178 **.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-55 | 46 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.743 | 50 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-23 | 51 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEETKTKMEV KSSVEINNSP ERKLQPLTAA TKSTPVSQRR HDNDSYWDSF PAGYRFCPFD 60 SELIVYYLKK KIMNERLPPN RINDVNLYQF NPHDLAEMYK GCAEKEKEFY FFTPRDRKYK 120 NGTRPNRAAG EGYWKATGAD KSIKHNGAVV GFKKTLVFYE GKPPKGDKTF WIMHEYRVNN 180 DSPPSTRTRL STDMRLDDWV LCRIYYKERS DKSLKSLHRT EDRASTEETN EPDCDKGSAV 240 DFSGYADTYS GYMQHLWQQQ NAFSQIPSFK DVSFDSIVNL DEPFQHDGTS IFGPDCVTND 300 LFWSAYNQEY ICFDQSQLDF SNRFEDTIIV KSNNSHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-51 | 36 | 208 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446143.1 | 0.0 | NAC transcription factor 29 | ||||
Refseq | XP_015383322.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 2e-54 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2H5P417 | 0.0 | A0A2H5P417_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TG88 | 0.0 | V4TG88_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446143.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18874 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-55 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10017618m |
Entrez Gene | 18052332 |
Publications ? help Back to Top | |||
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