PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017535m
Common NameCICLE_v10017535mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 333aa    MW: 38163.8 Da    PI: 8.6465
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017535mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.97e-104895255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ k++g
  Ciclev10017535m 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKIRG 95
                     789996.566899****999......44**********99************998 PP
2B383.81.6e-26172267184
                      EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k+ltpsdv+k++rlv+pkk+a ++              gg+   +++l++ d+  r W+++++++++s++yv+t+GW++Fvk+++Lke+D++
  Ciclev10017535m 172 FQKELTPSDVGKLNRLVIPKKYAVKYfpfisenaeenainGGV--DDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDII 263
                      99***************************99877776665544..889********************************************** PP

                      EEEE CS
               B3  81 vFkl 84 
                      +F+ 
  Ciclev10017535m 264 TFYA 267
                      **94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-1548104IPR016177DNA-binding domain
PROSITE profilePS5103217.37248103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1748103IPR001471AP2/ERF domain
CDDcd000184.75E-2448105No hitNo description
PfamPF008472.1E-54895IPR001471AP2/ERF domain
SMARTSM003804.7E-2348109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-31170271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-27171269IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-24171266No hitNo description
PROSITE profilePS5086312.337172289IPR003340B3 DNA binding domain
SMARTSM010197.9E-18172276IPR003340B3 DNA binding domain
PfamPF023624.9E-24172267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEDASSMVS NAKTNANNTE ASDSNNSTSG LQPAPKRMRH GKNVSLVKFK GVVPQQNGHW  60
GAQIYANHQR IWLGTFKSER EAAMAYDSAA IKIRGGDSHR NFPWTDTNNQ EPNFQNQYST  120
EAVLNMIRDG TYQPKFADYL RVQSQREDNN SNASLNQIMV HGDEQFAYRQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYFPF ISENAEENAI NGGVDDMELV FFDKLMRPWK FRYCFWRSSQ  240
SYVFTRGWNR FVKEKKLKEK DIITFYACEC ANGAKEGQNF FLVDVIHCEG QNCNVVKKPV  300
QLEQITGKIF SYNEKESNSE EKGFKLFGVQ IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2717126513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445925.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P51e-115RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLV4U5260.0V4U526_9ROSI; Uncharacterized protein
STRINGXP_006445925.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-116RAV family protein