PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017490m
Common NameCICLE_v10017490mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 143aa    MW: 15674.6 Da    PI: 9.7627
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017490mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-1988124135
             GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+  nC+t++Tp+WRrgp g+ktLCnaCG++yrk+++
  Ciclev10017490m  88 CTnyNCKTSDTPMWRRGPLGPKTLCNACGIKYRKEEE 124
                      55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-1484135IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-1385130No hitNo description
PfamPF003204.3E-1788124IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-1591126IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.01892138IPR000679Zinc finger, GATA-type
CDDcd002024.55E-1192135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGSPPLPIYY PHNINSVNNF NINPNQNVPL AAAAPPPPPM NDYTLLDVPP RRDELEEGSS  60
SAAAPARRRA TGTRRPRGGS IIDPNKRCTN YNCKTSDTPM WRRGPLGPKT LCNACGIKYR  120
KEEEKRLKAK EANSQSSNTE TD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445921.23e-56GATA zinc finger domain-containing protein 12
SwissprotQ9LT455e-19GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A2H5PC723e-97A0A2H5PC72_CITUN; Uncharacterized protein
TrEMBLV4UAD87e-99V4UAD8_9ROSI; Uncharacterized protein
STRINGXP_006445921.11e-99(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-15GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]