PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017149m

Common Name

CICLE_v10017149mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LSD

Protein Properties

Length: 134aa MW: 14615.6 Da PI: 7.2178

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017149m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.5	1.3e-14	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YPrGA++V+C++C+tV Ciclev10017149m 44 CGSCRQLLAYPRGARHVKCSCCQTV 68 ************************9 PP
2	zf-LSD1	41.4	2.4e-13	82	106	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GA+sVRC++C +V Ciclev10017149m 82 CASCAVLLMYPYGASSVRCSSCRFV 106 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.9E-18	41	71	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.1E-12	44	68	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.9E-11	79	107	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-11	82	106	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MENREKESME NQEENEEAGP PPGWQPIPPP LPVPSPSEMA QMVCGSCRQL LAYPRGARHV 60 KCSCCQTVNF VLEAHQVGQV KCASCAVLLM YPYGASSVRC SSCRFVTEIG DHNRRAPWSV 120 QQGQSAPPSN TVR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449334.1	4e-94	protein LOL2
Swissprot	O65426	1e-43	LOL2_ARATH; Protein LOL2
TrEMBL	A0A2H5N2N0	5e-93	A0A2H5N2N0_CITUN; Uncharacterized protein
STRING	XP_006449334.1	1e-93	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-42	lsd one like 2

Link Out ? help Back to Top
Phytozome	Ciclev10017149m
Entrez Gene	18053520