PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016229m

Common Name

CICLE_v10016229mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 275aa MW: 31206.3 Da PI: 5.3849

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016229m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.5e-30	79	137	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+ Ciclev10016229m 79 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSVDPSMLLITYSCEHNHP 137 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	72	139	IPR003657	WRKY domain
PROSITE profile	PS50811	32.053	73	139	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-26	74	139	IPR003657	WRKY domain
SMART	SM00774	7.5E-36	78	138	IPR003657	WRKY domain
Pfam	PF03106	6.7E-26	80	137	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDGRFNSNSN PFTGEQEEND TTPENSSESP PSSSTYNDMM KMTSTSSPKK RRAMQKRVIS 60 VPIKEVEGSR LKGESAPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSS 120 VDPSMLLITY SCEHNHPWPL PSTSRNHHHH HHHHHNSKAA KPDRDPEPEP EPEPEPEPEP 180 EHEEKFTDLA DHDNALMTTS ADEFTWFGEM ETTTSTILES PIFADRSQSD CDSLSMFFPM 240 REEDESLFAD LGELPECSMV FRRHRNLGPE VQIC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	56	139	6	79	Disease resistance protein RRS1
5w3x_D	2e-20	56	139	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449542.1	0.0	probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	2e-87	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	V4U9Y2	0.0	V4U9Y2_9ROSI; Uncharacterized protein
STRING	XP_006449542.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-86	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Ciclev10016229m
Entrez Gene	18053220

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]