PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10015976m | ||||||||
Common Name | CICLE_v10015976mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35500.6 Da PI: 7.9918 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.6 | 1.5e-33 | 72 | 212 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+e++ e+L++kv +++ +++ +i++++ i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Ciclev10015976m 72 LPAGVKFDPTDNEIL-EHLEAKVMSDSrklhplIDE--FIPTLEghngICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedg 161 799***********9.99****99999566433222..3443323334**********.555666777******************74444655 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Ciclev10015976m 162 sETRWHKTGKTRAVFV-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 212 5788************.99************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-37 | 67 | 231 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.172 | 72 | 231 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-15 | 73 | 212 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MRWCNNKKID SSEDDEGAAA ANAIDQLTTS SATNSTSAVR STDYEIRTIT CPSCGHIIQF 60 QDQAGINDLP GLPAGVKFDP TDNEILEHLE AKVMSDSRKL HPLIDEFIPT LEGHNGICYT 120 HPEKLPGVSK DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRAVFVGGT 180 VKGFKKILVL YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVASKVFY QTQPRQCGSS 240 GINKDPSLEI SGHNSIHVPH KSSPPTFIEY YNQPYMTYDH GSMHTRESSP QLIPNLVVQG 300 DGSSFIRLAT DTSSKKS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024047043.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_024047044.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | F4HY61 | 1e-116 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
Swissprot | O49459 | 1e-116 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | V4UK42 | 0.0 | V4UK42_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449416.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-117 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10015976m |
Entrez Gene | 18051619 |
Publications ? help Back to Top | |||
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