PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10015908m | ||||||||
Common Name | CICLE_v10015908mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 36490 Da PI: 7.8205 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46.6 | 5.8e-15 | 245 | 270 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg Ciclev10015908m 245 FKTELCNKWQETGACPYGDHCQFAHG 270 79***********************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 283 | 307 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H Ciclev10015908m 283 YKTEVCRMVLAGDVCPYGHRCHFRH 307 9**********55**********88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-19 | 239 | 277 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-11 | 241 | 276 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-9 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-12 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 278 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-12 | 278 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 282 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.821 | 282 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MQQMQNDGVS ANPYSNHGVA SSKSQDDENA DAFASLYSSL VMAQPETTLS HNPYNDPTIH 60 DSLYYSRLLI RQQQQQQHQD MINRHNLCLT RLREAAREAE ALRQENDSLR TVNRELNKHV 120 SLLIKSSVNE QLSCGNNDAA TSFGVVNGMR GLSIAGGGEE VSAESPTSVM ENVDVKRVSL 180 PKSISVRSNG YLKMGQPAAA AAAAATSKTR PRTPAPLRPT QKVYVKGGKQ EEEPLELEVY 240 NQGMFKTELC NKWQETGACP YGDHCQFAHG IEELRPVIRH PRYKTEVCRM VLAGDVCPYG 300 HRCHFRHALT EQERFMGHLN PRSIKLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-22 | 245 | 311 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006448374.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q9C9F5 | 5e-88 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | V4W666 | 0.0 | V4W666_9ROSI; Uncharacterized protein | ||||
STRING | XP_006448374.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7287 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 4e-70 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10015908m |
Entrez Gene | 18052348 |