PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015808m
Common NameCICLE_v10015808mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 348aa    MW: 37256.7 Da    PI: 8.3226
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015808mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.3e-32174230158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy +Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+RgsgGrF
  Ciclev10015808m 174 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 230
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-35172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.698173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-28175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-24176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.8E-24207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MRSKSERTNQ LEPDPNAIPP GAAYTEPWWR GVGYNSISPA LAGANVSNSS SLDCPNGSES  60
NDAKSISNDG LNEEDDDANK ESQATASSRS AGNHGQKNQN VQQGASAMPT IRDECFTQPP  120
QLELVGHSIA CASNPYQDPY YGGMMAAYGH QPVGYPQFVG MPHARMPLPL EMAQEPVYVN  180
AKQYMGILRR RQARAKAELE KKLIKVRKPY LHESRHQHAM RRARGSGGRF AKKTDDASKG  240
NSEKKGGGSG IRPSLSGSSS GSEPVPSDSA ETWNSSASQQ DVGGSQAHNM HEARNHANAN  300
GGYQNHGLQA STYHSHLGDR GETGDCSGKQ WGSISSNQAS QRPLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18174230258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.213600.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446125.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446126.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446127.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446128.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006470619.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470620.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470621.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470622.10.0nuclear transcription factor Y subunit A-1
SwissprotQ9LXV52e-91NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A067F5720.0A0A067F572_CITSI; Uncharacterized protein
TrEMBLV4U5J80.0V4U5J8_9ROSI; Uncharacterized protein
STRINGXP_006470619.10.0(Citrus sinensis)
STRINGXP_006446125.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.37e-89nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]