PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015789m
Common NameCICLE_v10015789mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 350aa    MW: 38485.7 Da    PI: 7.4987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015789mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-0787111126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f+  GtC+y  +C+FaH+
  Ciclev10015789m  87 FKTKLCCKFRN-GTCPYITNCNFAHS 111
                      69*********.*************8 PP
2zf-CCCH17.47.9e-06162187126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yG++C+F H+
  Ciclev10015789m 162 YKGRHCKKFYTEEGCPYGENCTFLHD 187
                      78888********************7 PP
3zf-CCCH42.79e-14229254126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Ciclev10015789m 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.38E-884117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.14186113IPR000571Zinc finger, CCCH-type
SMARTSM003560.002186112IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-587111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9159189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.17161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-17223258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-10225259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704228256IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-9228255IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSYSRDSSEN VVHIIVGNGA PEHWIPNPND SSVWATEDDY PDDPPSISNS NCQSQTRSNS  60
EQPPNKKSRN GSQDVNSKSK AIGKMFFKTK LCCKFRNGTC PYITNCNFAH SIEELRRPPP  120
NWQEIVAAHE EERASTNEIP REEFQIPSIV STNFAVETQR SYKGRHCKKF YTEEGCPYGE  180
NCTFLHDEQS KNRESVAISL GPGGYGGGGA AAAAAGNNIG VSNVKPSNWK TRICNKWELT  240
GYCPFGNKCH FAHGIQELHR FGGGLLESEN KDSSAAPSDA KLVGVPSKTP VDTVVASVTS  300
VPHADVYHMG VPSQRSSIVV QRPGQRSHKK WKGPDKISRI YGDWIDDIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445697.10.0zinc finger CCCH domain-containing protein 12
RefseqXP_006485547.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-134C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2H5QXC90.0A0A2H5QXC9_CITUN; Uncharacterized protein
TrEMBLV4TZ870.0V4TZ87_9ROSI; Uncharacterized protein
STRINGXP_006485547.10.0(Citrus sinensis)
STRINGXP_006445697.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-137C3H family protein