PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10015635m | ||||||||
Common Name | CICLE_v100150761mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | VOZ | ||||||||
Protein Properties | Length: 376aa MW: 41810.9 Da PI: 6.152 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 406.8 | 4.3e-125 | 98 | 314 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 pppsaf+gpkcalwdctrpa gse ++dycs+fhatla+ e++pg+tpvlrp+gi+lkd+llf+a++a++qgk vgip+cegaat+kspwna+e Ciclev10015635m 98 PPPSAFMGPKCALWDCTRPALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATE 191 89******************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 lfdl+llegetirewlffdk r+afesg rkqrslpd+sgrgwhesrk vmkefgg+krsyymdpqps+ +ewhlyeyei +da+alyrle+k Ciclev10015635m 192 LFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKLVMKEFGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVK 285 ********************************************************************************************** PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 l+ ekks+k kv+kdsladlqkk+grlta Ciclev10015635m 286 LASEKKSPKVKVTKDSLADLQKKMGRLTA 314 ***************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MKPQPDVQGH PGTMMAFQED YVVNNELQGH CFQGFDKCED SASGLHNPTV GISGLTTQLD 60 YSHLIFRQEL ENLLLDGVNG TEECEKDIGP NSLPIIHPPP SAFMGPKCAL WDCTRPALGS 120 ELFEDYCSNF HATLAVSEDS PGLTPVLRPG GINLKDSLLF NAVNARAQGK RVGIPHCEGA 180 ATTKSPWNAT ELFDLALLEG ETIREWLFFD KHRKAFESGT RKQRSLPDHS GRGWHESRKL 240 VMKEFGGQKR SYYMDPQPSD GLEWHLYEYE IIGFDAYALY RLEVKLASEK KSPKVKVTKD 300 SLADLQKKMG RLTADVPVDN KSSFKGKIET NGKVDSATVN SSQNEMTSAT EILHHGSSSP 360 YKYLADNSAD YYHKY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20112 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446732.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-123 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2H5PTD5 | 0.0 | A0A2H5PTD5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U249 | 0.0 | V4U249_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446732.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-126 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10015635m |
Entrez Gene | 18051503 |
Publications ? help Back to Top | |||
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