PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015238m
Common NameCICLE_v10015122mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 447aa    MW: 49378.9 Da    PI: 10.3349
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015238mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-08841337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W t+E++ll  av ++G+++W+++a+++  gRt 
  Ciclev10015238m  8 VWGTWEELLLGGAVLRHGTRDWNLVAAELR-GRTV 41
                     6*****************************.6653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.8E-7857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-4957IPR009057Homeodomain-like
CDDcd001674.60E-5955No hitNo description
SuperFamilySSF473702.62E-17233345IPR001487Bromodomain
SMARTSM002978.3E-14240344IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.6E-14243347IPR001487Bromodomain
PfamPF004394.3E-10250328IPR001487Bromodomain
PROSITE profilePS5001410.084255325IPR001487Bromodomain
CDDcd043691.75E-13257339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGAEVIEVWG TWEELLLGGA VLRHGTRDWN LVAAELRGRT VCPYTVTPEM CKAHYEDLQQ  60
RFYGCKSLES KLETLKAERG NDCQVDNDCS QTESPVPCQK SDAVVCSSKE TSKDGLSAGS  120
FTRETRTHWS PVSQIPAAVA AEEMETKTED LLSSEQEKVS SSEKITAIVC GGQVGSLKKR  180
RGKRKRKDCS RDVKEGSVGE SDFLGVPDAK PGSRRKENST PVSGQFARSS GADDQSGSLR  240
KDSIDDIKGV FESVAQNESA FVFRHRLDSQ KRGRYKKMIL RHMDVDTIRS KISSHSIMSI  300
KELFRDLLLL ANNAVVFYSK NTREHKSAFL LRTIVLKTMR QYFKDNEYGN KPTTSFLSPS  360
SPLHKPPVKP RTARPGRSKL SLKAANAGNP ADKPLSRAKK PSNVDSPSSM ESLTLTKKSL  420
SRKVGRTNAS QRAESATRGR KRSRAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183LKKRRGKR
2177182KKRRGK
3179187RRGKRKRKD
4438444GRKRSRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.72911e-127abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449265.10.0uncharacterized protein LOC18052561 isoform X4
TrEMBLV4UE970.0V4UE97_9ROSI; Uncharacterized protein
STRINGXP_006449266.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.19e-13DNA-binding bromodomain-containing protein