PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015144m
Common NameCICLE_v10015144mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 467aa    MW: 51938.4 Da    PI: 5.4725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015144mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17219269256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  Ciclev10015144m 219 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDRAEDAALAYDREAFKLRGE 269
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-32218278No hitNo description
Gene3DG3DSA:3.30.730.105.3E-31219277IPR001471AP2/ERF domain
SMARTSM003801.8E-38219282IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22219277IPR016177DNA-binding domain
PROSITE profilePS5103222.286219276IPR001471AP2/ERF domain
PRINTSPR003679.4E-10220231IPR001471AP2/ERF domain
PfamPF008479.2E-11220269IPR001471AP2/ERF domain
PRINTSPR003679.4E-10242258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAAAKNSSKS EKGVDEATEE MVRSQDWEID EGKDFDLSSF ERRQQWRPVL DEASVSQRPL  60
KKIRSPERHQ NPVKFSSSFD YQSPSISSVS PASASTLGSS SSRLVFPFAF DTSQQAIQFP  120
QQFPTSQLQT PLPNFHPPIQ PAQTQQQMIS FSAHQQQQGF PFFAGESMLP HQQHQRQLLQ  180
YWSDALNLSP RGRLMMNRIG PDGRPLFRPQ VQPLNTTKLY RGVRQRHWGK WVAEIRLPRN  240
RTRLWLGTFD RAEDAALAYD REAFKLRGEN ARLNFPELFL NKDKAAVSTD PGSNISSPPS  300
PYESSMPNRL QTQHAQNSLN SQVMSSEPIP APPPQPKVEI PDSESGLGSS EATASDDVLA  360
AAEGSGSGEG VSGSQELAWG EMAEAWFNAI PAGWGPGSPV WDDFDSSNNL LMPANLPFVN  420
QSQQEFPDSD RQRQHDNSVS AASSTSPPCP MKPFFWKDQD HPQDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19218276160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447343.10.0ethylene-responsive transcription factor ERF053
RefseqXP_006491642.10.0ethylene-responsive transcription factor ERF053
TrEMBLV4TJF80.0V4TJF8_9ROSI; Uncharacterized protein
STRINGXP_006491642.10.0(Citrus sinensis)
STRINGXP_006447343.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-51ERF family protein