PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015122m
Common NameCICLE_v10015122mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 473aa    MW: 52466.4 Da    PI: 10.3122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015122mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08841337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      W t+E++ll  av ++G+++W+++a+++  gRt 
  Ciclev10015122m  8 VWGTWEELLLGGAVLRHGTRDWNLVAAELR-GRTV 41
                     6*****************************.6653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.3E-7857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4957IPR009057Homeodomain-like
CDDcd001678.57E-5955No hitNo description
SuperFamilySSF473702.88E-17259371IPR001487Bromodomain
SMARTSM002978.3E-14266370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.9E-14269373IPR001487Bromodomain
PfamPF004394.7E-10276354IPR001487Bromodomain
PROSITE profilePS5001410.084281351IPR001487Bromodomain
CDDcd043692.00E-13283365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGAEVIEVWG TWEELLLGGA VLRHGTRDWN LVAAELRGRT VCPYTVTPEM CKAHYEDLQQ  60
RFYGCKAWFE ELRKQRMAEL KRALELSENS IGSLESKLET LKAERGNDCQ VDNDCSQTES  120
PVPCQKSDAV VCSSKETSKD GLSAGSFTRE TRTHWSPVSQ IPAAVAAEEM ETKTEDLLSS  180
EQEKVSSSEK ITAIVCGGQV GSLKKRRGKR KRKDCSRDVK EGSVGESDFL GVPDAKPGSR  240
RKENSTPVSG QFARSSGADD QSGSLRKDSI DDIKGVFESV AQNESAFVFR HRLDSQKRGR  300
YKKMILRHMD VDTIRSKISS HSIMSIKELF RDLLLLANNA VVFYSKNTRE HKSAFLLRTI  360
VLKTMRQYFK DNEYGNKPTT SFLSPSSPLH KPPVKPRTAR PGRSKLSLKA ANAGNPADKP  420
LSRAKKPSNV DSPSSMESLT LTKKSLSRKV GRTNASQRAE SATRGRKRSR AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202209LKKRRGKR
2203208KKRRGK
3205213RRGKRKRKD
4464470GRKRSRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.72910.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449266.10.0uncharacterized protein LOC18052561 isoform X2
TrEMBLV4UJL20.0V4UJL2_9ROSI; Uncharacterized protein
STRINGXP_006449266.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.16e-19DNA-binding bromodomain-containing protein