PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10015076m

Common Name

CICLE_v100150761mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

VOZ

Protein Properties

Length: 484aa MW: 53491.9 Da PI: 5.6026

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015076m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	405.9	8.2e-125	206	422	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 pppsaf+gpkcalwdctrpa gse ++dycs+fhatla+ e++pg+tpvlrp+gi+lkd+llf+a++a++qgk vgip+cegaat+kspwna+e Ciclev10015076m 206 PPPSAFMGPKCALWDCTRPALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNATE 299 89****************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 lfdl+llegetirewlffdk r+afesg rkqrslpd+sgrgwhesrk vmkefgg+krsyymdpqps+ +ewhlyeyei +da+alyrle+k Ciclev10015076m 300 LFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKLVMKEFGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVK 393 ****************************************************************************************** PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 l+ ekks+k kv+kdsladlqkk+grlta Ciclev10015076m 394 LASEKKSPKVKVTKDSLADLQKKMGRLTA 422 *************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MQSGSKSKCA SASHQFLLDS AKNRLNDLQE KFANLRVARK EGRANDVAVL EEQVNQILRE 60 WNSELSAPSP ASSLLGGSLG LFPNDIDRLL QLGDEQDDAT SPLAGFAEMK PQPDVQGHPG 120 TMMAFQEDYV VNNELQGHCF QGFDKCEDSA SGLHNPTVGI SGLTTQLDYS HLIFRQELEN 180 LLLDGVNGTE ECEKDIGPNS LPIIHPPPSA FMGPKCALWD CTRPALGSEL FEDYCSNFHA 240 TLAVSEDSPG LTPVLRPGGI NLKDSLLFNA VNARAQGKRV GIPHCEGAAT TKSPWNATEL 300 FDLALLEGET IREWLFFDKH RKAFESGTRK QRSLPDHSGR GWHESRKLVM KEFGGQKRSY 360 YMDPQPSDGL EWHLYEYEII GFDAYALYRL EVKLASEKKS PKVKVTKDSL ADLQKKMGRL 420 TADVPVDNKS SFKGKIETNG KVDSATVNSS QNEMTSATEI LHHGSSSPYK YLADNSADYY 480 HKY*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MQSGSKSKCA SASHQFLLDS AKNRLNDLQE KFANLRVARK EGRANDVAVL EEQVNQILRE  60
WNSELSAPSP ASSLLGGSLG LFPNDIDRLL QLGDEQDDAT SPLAGFAEMK PQPDVQGHPG  120
TMMAFQEDYV VNNELQGHCF QGFDKCEDSA SGLHNPTVGI SGLTTQLDYS HLIFRQELEN  180
LLLDGVNGTE ECEKDIGPNS LPIIHPPPSA FMGPKCALWD CTRPALGSEL FEDYCSNFHA  240
TLAVSEDSPG LTPVLRPGGI NLKDSLLFNA VNARAQGKRV GIPHCEGAAT TKSPWNATEL  300
FDLALLEGET IREWLFFDKH RKAFESGTRK QRSLPDHSGR GWHESRKLVM KEFGGQKRSY  360
YMDPQPSDGL EWHLYEYEII GFDAYALYRL EVKLASEKKS PKVKVTKDSL ADLQKKMGRL  420
TADVPVDNKS SFKGKIETNG KVDSATVNSS QNEMTSATEI LHHGSSSPYK YLADNSADYY  480
HKY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.20112	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446732.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-167	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2H5PTD5	0.0	A0A2H5PTD5_CITUN; Uncharacterized protein
TrEMBL	V4U249	0.0	V4U249_9ROSI; Uncharacterized protein
STRING	XP_006446732.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-158	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Ciclev10015076m
Entrez Gene	18051503

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]