PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10014665m

Common Name

CICLE_v10014665mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 600aa MW: 65172.9 Da PI: 6.7676

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014665m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.4e-31	328	386	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Ciclev10014665m 328 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 386 8*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-34	312	388	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-28	320	388	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	322	388	IPR003657	WRKY domain
SMART	SM00774	3.8E-37	327	387	IPR003657	WRKY domain
Pfam	PF03106	6.2E-27	328	386	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MAKGSGLSID HNISDPIAGK NKNFFLCHQP AVLNSFSDDH HHFHKFHYLM DAKRSPATTP 60 STIQFPVCLN HDEDSPQQSS DDHHHHNKRK VIDEMDFFTD KTTHSRDHHH YKDSKLELNV 120 NTGLNLLTTN TSSDHSTVDD GISTNMEDKK AKNEYAVVQA ELERVNAENQ RLKDMVNEVT 180 NNYNALQLQL MAFMQHHNAR AADENSDGRQ VEEKKGQLAA PRRFIDLGLG VNTADTADEP 240 ALSSSEGRSR DLGGSPVNGN SNNNEESNVL FGQDKKEFVK RDDSPDRNYG PNKVPKFSSS 300 SKNVDQTEAT MRKARVSVRA RSEAPMINDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP 360 VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARLLLSGSM SSADGLMNAN 420 FLARTLLPCS SSMATISASA PFPTVTLDLT QTPNPSNVQR SPNQFQVPFP NPSHNFADGA 480 AAAAAGSLLP QIFGQALYNQ SKFSGLQMSQ DMDPSQLGNQ SQLPSPAMQQ GQQHNSLADS 540 VSAATAAIAA DPNFTAALAA AITSIINGGT PQSNNVTNNE NTDDLATTTN GNVKFSQSS*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MAKGSGLSID HNISDPIAGK NKNFFLCHQP AVLNSFSDDH HHFHKFHYLM DAKRSPATTP  60
STIQFPVCLN HDEDSPQQSS DDHHHHNKRK VIDEMDFFTD KTTHSRDHHH YKDSKLELNV  120
NTGLNLLTTN TSSDHSTVDD GISTNMEDKK AKNEYAVVQA ELERVNAENQ RLKDMVNEVT  180
NNYNALQLQL MAFMQHHNAR AADENSDGRQ VEEKKGQLAA PRRFIDLGLG VNTADTADEP  240
ALSSSEGRSR DLGGSPVNGN SNNNEESNVL FGQDKKEFVK RDDSPDRNYG PNKVPKFSSS  300
SKNVDQTEAT MRKARVSVRA RSEAPMINDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP  360
VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARLLLSGSM SSADGLMNAN  420
FLARTLLPCS SSMATISASA PFPTVTLDLT QTPNPSNVQR SPNQFQVPFP NPSHNFADGA  480
AAAAAGSLLP QIFGQALYNQ SKFSGLQMSQ DMDPSQLGNQ SQLPSPAMQQ GQQHNSLADS  540
VSAATAAIAA DPNFTAALAA AITSIINGGT PQSNNVTNNE NTDDLATTTN GNVKFSQSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-23	314	390	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447589.1	0.0	probable WRKY transcription factor 31
Refseq	XP_006495237.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-140	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	V4W499	0.0	V4W499_9ROSI; Uncharacterized protein
STRING	XP_006495237.1	0.0	(Citrus sinensis)
STRING	XP_006447589.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	1e-112	WRKY DNA-binding protein 31

Link Out ? help Back to Top
Phytozome	Ciclev10014665m
Entrez Gene	18051011