PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10014642m | ||||||||
Common Name | CICLE_v10014642mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 608aa MW: 65905.8 Da PI: 6.6575 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 358 | 416 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Ciclev10014642m 358 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 416 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-33 | 342 | 418 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 350 | 418 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 352 | 418 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 357 | 417 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 359 | 416 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MDKGWGLTLD SDHPIVSNLN FFTSNKPKPS LARFRTNRDM AASGAADSAS VRMFQLPASD 60 NSNAPSSSDD NRVAVDEVDF FSDDKNRVSI SDHREDDRNK TTNSVHIKKE NSHDQLRHRT 120 GLDVNTGLHL LTAANTGSDQ STVDDGVSSD HADKKRTKIE LTQLQVELQQ MNTENQRLRD 180 MLSQVTNNYN ALQMHIVALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD QVMVPRQFIG 240 LGPSAETDHE VSNCSSDEER TLSGTPPNNV EAASKEHVNS NGKNEIVSFD DQAAAAAENS 300 NGKRIGREES PESETQGWGP NNKVQKLSSA KGIDQSNEAT MRKARVSVRA RSEAPMITDG 360 CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE GNHNHPLPPA 420 AMAMASTTTA AASMLLSGSM SSADGIMNPN LLARAILPCS SSMATISASA PFPTVTLDLT 480 HSPNPLQLQR QAAQFQVQFP GQPQNLASVT NTQLPQVFGQ ALYNQSKFSG LQLSQNIGSN 540 SQSGSHQTLP PPLQQPQQLA DTVSAATAAI TADPNFTAAL AAAITSIIGG AQNPFSNNSN 600 NNNRQHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 344 | 420 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.3305 | 0.0 | fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449767.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-163 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
Swissprot | Q9XEC3 | 1e-163 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A2H5N4U2 | 0.0 | A0A2H5N4U2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UAG6 | 0.0 | V4UAG6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449767.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 1e-137 | WRKY DNA-binding protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10014642m |
Entrez Gene | 18050472 |