PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014556m
Common NameCICLE_v10014556mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 648aa    MW: 74715 Da    PI: 8.5609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014556mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-09441480345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE el  +  +++G++ Wkt a t+g  + + ++k+ w+
  Ciclev10014556m 441 KWTPEELELVRKFYEKHGSD-WKTMADTLG--KHRFHVKDAWR 480
                      8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0054365436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-5368455IPR009057Homeodomain-like
SMARTSM007170.13438485IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-9439500IPR009057Homeodomain-like
PROSITE profilePS500906.632441483IPR017877Myb-like domain
PfamPF139211.5E-11442500No hitNo description
Gene3DG3DSA:1.10.10.606.8E-9456494IPR009057Homeodomain-like
PROSITE profilePS500908.177484552IPR017877Myb-like domain
SMARTSM007172.1488554IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-5489608IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-7495552IPR009057Homeodomain-like
PROSITE profilePS500907.306554607IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MGKRTTGKKN KDDETDADTL EEEVINSRIR HEVSDNDVEF RATPNDVVAE DDVDVKRQKK  60
NKKKKRDEIR GDDVELCAVS KNEVALRDGK KRKNKQRNED GVNDAGLREG RIEDLVESNA  120
DEAESEKKKK KKLLEDGSDG AESSVNQSKA VIDIDVHVHK EKKKKKSKKR QEVSCDDDEF  180
GSTINETVVE GDVDMNTENK KDRKKKKKKK KRKLEIKEDE TVLEGDVDMN TENEKDGKKK  240
KKRKLGINEA KKNKDERFNN EDEVSGVLNQ GLKHHLELEE NTSLHKQKND LEEEGENKKK  300
KKAMSIGKHS GGDKKVSRTK KGVKPNDPSE SSAHKERPKK VSFSDHVQVV PSSEAKSDKN  360
DGFVRGKRFS LEEDEMIKKA VINYIEAHRL GEDGLNMVLH CRSYPEIKHC WKEIGAALPW  420
RPCESIYYRA HILFERDENR KWTPEELELV RKFYEKHGSD WKTMADTLGK HRFHVKDAWR  480
RIKLPNQKKG QWSQEEYQKL FDLVNMDLRM KASEEKRTKH GMLRDNISWE AISEKLSTRT  540
NAICCMKWYD QLTSPMVAEG KWADTDDFHL VNALSGLDAC CMDDVDWDNL LEHRSGTICR  600
KRWNQIVKHL GTDGNKSFPE QVEILSTRYC PDVLEARLAY NSKGTTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199213KKDRKKKKKKKKRKL
2201207DRKKKKK
3201213DRKKKKKKKKRKL
4204212KKKKKKKRK
5237243KKKKKRK
6237244KKKKKRKL
7238243KKKKRK
8239244KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448813.10.0RNA polymerase I termination factor
TrEMBLV4TNG90.0V4TNG9_9ROSI; Uncharacterized protein
STRINGXP_006448813.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-130MYB_related family protein