PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014481m
Common NameCICLE_v10014481mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 691aa    MW: 80178.1 Da    PI: 6.2895
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014481mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.33e-2471162190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  Ciclev10014481m  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162
                      69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2271162IPR004330FAR1 DNA binding domain
PfamPF105516.9E-22294387IPR018289MULE transposase domain
PROSITE profilePS5096610.299564600IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7572598IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-5575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAMKPPTNIW IRRQQCPCGD WKCYIKYEGD DQASTSSQQE KTETTSSLLS SEVVFTPYVG  60
QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRML PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELFE ACKNMAERDV DFVYDYTTDE NEKVENIAWS FGDSIRAYTL FGDVVTFDTS  300
YRSITYGLLL GVWFGMDNHG KAIFFGCVLL QDESTHSFAW ALQTFVRFMR GRHPQTILTD  360
IDLGLRDSIA RELPNTKHVV CIWHILSKLS SWFSSLLGSQ YEEFKAEFDM LCRLESVEDF  420
EHQWNHFVAR FGLVSDKHVA LLFSYRAFWL FSYIRGYFLA RMMTVEFSQS VDTFFKKILS  480
EQTCLQVFFE QVCAAAFGNS TREGVQYVHI KTCMPIEEHA RSILTPYAFR VLQHEIVLST  540
QYATTEMTNG SYLVRHYKKM DGEYLVIWIP EDEQIHCSCK EFEHSGILCR HSLGVLVVKN  600
YFQLPEKYLL LRWRLENSLV TMEDPNPQSS SDECAQAFHS LAAALLTESM ISKERFSYVH  660
KELTGLLDHV RNMPETNEFV VNMPAHNASD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447802.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006447803.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_015382916.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024047442.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2H5QIJ80.0A0A2H5QIJ8_CITUN; Uncharacterized protein
TrEMBLV4TKP70.0V4TKP7_9ROSI; Uncharacterized protein
STRINGXP_006469463.10.0(Citrus sinensis)
STRINGXP_006447802.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]