PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014474m
Common NameCICLE_v10014474mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 692aa    MW: 80007 Da    PI: 6.6004
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014474mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22.1e-2169160190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y ++A++ GFsvrk++s+ s + g ++kr+fvC+++g++  +kk   +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Ciclev10014474m  69 EYYGNFARKSGFSVRKERSRLSPQLG-VYKRDFVCYRSGFAPMRKKPGGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 160
                      59********************8888.********************9**********************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1969160IPR004330FAR1 DNA binding domain
PfamPF105515.2E-18292380IPR018289MULE transposase domain
PROSITE profilePS509669.965564599IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-7568598IPR007527Zinc finger, SWIM-type
SMARTSM005758.7E-5574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MALLTSKNIW MRRQQCPCGD WKCYVSHEGD SEETSVASQL AKNDENSLNE SMVAPYVGMV  60
FKSDDDAFEY YGNFARKSGF SVRKERSRLS PQLGVYKRDF VCYRSGFAPM RKKPGGEHHR  120
DRKSVRCGCD AKMYLSKEVV EGVSQWFVVQ FSNVHNHELL ESDQVRFLPA YRKIQEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRRRAVQE NDALLTEKRE  240
TDTMELLDIC KATNETEEYF VYDFTVDENN KVENIAWSFP GSIHAYAMLG DVVYFDTTYR  300
SITYGLIFGA WLGIDSNGRT ILFGVALLQD ETLRSFAWAL QTFVHFMKGR CPKTILTDLD  360
PGLGDAIRSA LPNTRHVISV CNILPKLSGW FSLLLGSQFS EFKSEFGALC HVESTEDFEL  420
QWSQMVSMFG LGSDRHIALL YSVRTSWALS YIRGYFLARM ATPAYLKSVD AFLKRIFAAQ  480
TCLRSFFEQV GLFSNLQNQP RQEMQYMHMK TCIPIEEQAR RTLTPFAFNA FQRELVLAMQ  540
YSASELGNGT YLVHHFKKMD GERRVIWIPD DEQLHCSCKE FESSGIPCRH AFRVFITKNY  600
FQLPEKYFPS RWLRESSLAF FYDHDAQQNE DWIQEFHSLT ERLFAESSIT KERSDYIRKE  660
LTKELTRLLN EVRDMPESDG IAMDFTLSPT D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449915.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024047739.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLV4UG650.0V4UG65_9ROSI; Uncharacterized protein
STRINGXP_006449915.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]