PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014438m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 713aa    MW: 78153.2 Da    PI: 6.7553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014438mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-06299319526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++ G C++Gd C +aHg
  Ciclev10014438m 299 PCPDHRK-GACSRGDMCEYAHG 319
                      7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.0E-1081155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.35986193IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-1686168IPR020683Ankyrin repeat-containing domain
SMARTSM002486.9E-486116IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.208.7E-1887166IPR020683Ankyrin repeat-containing domain
CDDcd002047.32E-1688164No hitNo description
PROSITE profilePS5008811.915121156IPR002110Ankyrin repeat
SMARTSM002480.0023121153IPR002110Ankyrin repeat
SMARTSM003560.0015294320IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-4299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69299321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4326357IPR000571Zinc finger, CCCH-type
SMARTSM0035641329352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MCGGSEKLSS KALAPSASPP SKPSLQRNMS NPTETMKSDH SFSRLLELAA DNDVEGFKQC  60
ICDTSAICEV GLWYSFQRLS KKIVLQHRTP LMVAAEYGSV DVVKLILSLT KADVNLTCGL  120
DKSTALHCAA SGGSVNAVDV VKLLLFAGAD SNLTDAHGNR PFDVIVVHPN VPDSRVSLED  180
LLKNGGSVSF DELQVSSVDL RSSSSLSSSS DDSSLSSLTC KSDDVHAFVA PEKKEYPIDP  240
SLPDIKDSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFAH PGENARRRDP RKFHYSCMPC  300
PDHRKGACSR GDMCEYAHGI FESWLHPAQY RTKLCKDGTS CMRRVCFFAH ALDELRPLYA  360
STGSGMPSPQ SATAMNMLPG SPSAVSAMLP SPFTPPMSPS NDILCLSMAW PQQNIPTLHL  420
PSSNLQASRL RSSLNARDIP VEDLGMLRDF EMQNQLINEF SHSQPQFGTS SGGNMSVRLN  480
RLTPTKLDQL SYPEISSPQY SDQFAASNVF SPSHKSMVLN QLQQQQQNMS SPINTNVFSP  540
MNVDHPLLQA SFGISSPGRM SPRKMEPISP MSPRVSTLTP REKLLQQLHS LSLREHGPRL  600
SCDLKSDSPI GSVLNSWSKL ESPSMKIDWS IQADELNHLR RSHSFGRNGE GLDVSTVQSH  660
MRETPSKMKE TTPAPPSSMS FPTEGANLNP QSESGDHLGA WLDQLQLDQI VA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446119.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_006470610.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470611.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470612.10.0zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_024047012.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067FDI90.0A0A067FDI9_CITSI; Uncharacterized protein
STRINGXP_006470610.10.0(Citrus sinensis)
STRINGXP_006446118.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain