PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013814m

Common Name

CICLE_v10013814mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 292aa MW: 32478.1 Da PI: 5.6003

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013814m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.7e-37	16	70	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Ciclev10013814m 16 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 70 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	7	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.714	15	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	16	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MERVWNHKPN VEISPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPV 60 GGGCRKNRRG KSVRLSTDGV SSKSLSYMGE INKVNGFLES TSTSSLMQQQ DGSHIDIALV 120 FANFLNQPPE EKPAGSFELP ELPDIDPSME FNSCMVSTNL ESRVQLPEEN VNNGLVRSLS 180 FSDLSSAETQ THFRDNDQSY YTMFNSVQKH GHHVQDGIPS NQVLPPLPSE EILWLNSQMM 240 MNQSLQAAAA AATQEPMLGP ADDHQAQDPN NLLFGNWSPL DFSSDDTFSK T*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430054.1	0.0	dof zinc finger protein DOF3.5
TrEMBL	V4UUG9	0.0	V4UUG9_9ROSI; Uncharacterized protein
STRING	XP_006430054.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-48	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10013814m
Entrez Gene	18038244