PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013455m | ||||||||
Common Name | CICLE_v10013455mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27686.2 Da PI: 7.563 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++++++G W+ ++ + g++R++k+c++rw++yl Ciclev10013455m 9 KGAWTEEEDDLLRKCIEKYGEAKWHQVPLRAGLHRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ciclev10013455m 62 RGEFAADEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTHL 107 788999****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.477 | 1 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 5 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.23E-27 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.70E-10 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 59 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.467 | 61 | 111 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.2E-13 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.11E-9 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MADSLEVRKG AWTEEEDDLL RKCIEKYGEA KWHQVPLRAG LHRCRKSCRL RWLNYLNPNI 60 KRGEFAADEV DLILRLHKLL GNRWSLIAGR LPGRTANDVK NFWNTHLRKK VDKCCKNNKE 120 MKAKAEKGKG MTSNNLQLGD YNLGKQSTPS DHHHHHQQQQ ENETESVWWE SFLFGDELDQ 180 QGISSLLSRP EEESTTANIF AEKSPVVTKV KENRVIEAGQ SCTTDDFAFD AELWDLLNAK 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-24 | 6 | 111 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN402334 | 0.0 | JN402334.1 Citrus sinensis cultivar Moro Myb transcription factor (Ruby) mRNA, complete cds. | |||
GenBank | JN402335 | 0.0 | JN402335.1 Citrus sinensis cultivar Jingxian Myb transcription factor (Ruby) mRNA, complete cds. | |||
GenBank | KT757348 | 0.0 | KT757348.1 Citrus sinensis R2R3 MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024038103.1 | 1e-166 | LOW QUALITY PROTEIN: transcription factor MYB113 | ||||
TrEMBL | V4ST16 | 1e-178 | V4ST16_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430622.1 | 1e-179 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-61 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013455m |
Entrez Gene | 18039527 |