PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013323m
Common NameCICLE_v10013323mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 120aa    MW: 13753.2 Da    PI: 7.6705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013323mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-08242247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     g++T eEd+l++++  +lG+++       ++ gRt++++k+ w+++
  Ciclev10013323m  2 GNFTNEEDKLIIKLYSLLGNKNS----FFLP-GRTDNEIKNCWNTH 42
                     79*******************33....3589.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.303147IPR017930Myb domain
SuperFamilySSF466897.8E-9253IPR009057Homeodomain-like
PfamPF002492.8E-6242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-13247IPR009057Homeodomain-like
CDDcd001671.51E-7343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
CGNFTNEEDK LIIKLYSLLG NKNSFFLPGR TDNEIKNCWN THIKRKLLNH GLDPQTHHPL  60
NQIHNHNIFN KYTINNNEEI NQPKNLIKPK SESSFDNNTT TTNNKNYSTS GMTTDEEPP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434585.12e-50transcription repressor MYB6
SwissprotQ388519e-30MYB6_ARATH; Transcription repressor MYB6
TrEMBLV4UQJ36e-80V4UQJ3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428539.11e-80(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-26myb domain protein 6