PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013312m
Common NameCICLE_v10013312mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 643aa    MW: 71776.1 Da    PI: 9.1331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013312mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.7e-11659148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     +++W t E++ll++av+++G+ +W ++a +++      + +t+ +c+ ++++++
  Ciclev10013312m  6 KQAWGTKEELLLACAVHRYGTQNWISVATEVQkrsskfQLLTPLSCQQKYNDLK 59
                     799***********************************99**********9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.915163IPR017930Myb domain
SuperFamilySSF466894.37E-6561IPR009057Homeodomain-like
SMARTSM007172.8E-5561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-5642IPR009057Homeodomain-like
PfamPF002491.9E-10659IPR001005SANT/Myb domain
CDDcd001674.30E-5859No hitNo description
Gene3DG3DSA:1.20.920.103.0E-16263377IPR001487Bromodomain
SMARTSM002972.4E-11269378IPR001487Bromodomain
SuperFamilySSF473705.1E-18280374IPR001487Bromodomain
CDDcd043691.14E-14280373No hitNo description
PfamPF004396.9E-11287362IPR001487Bromodomain
PROSITE profilePS5001413.299288359IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
NNFPEKQAWG TKEELLLACA VHRYGTQNWI SVATEVQKRS SKFQLLTPLS CQQKYNDLKR  60
RFSGNDAVSI SADNSDDAIP WLDQLKKLRV AELKRELQLF DISIVSLQLK VERLIEEREG  120
KETEDGEKRK RIEENEPESL TDKPDGGEES DRENRSVNES NSTDQKAEKT AKEPVPSEPV  180
RVEPEGVGSE GVKAAGEDSC NGSCGSAAKE LERHTDRVDS AELGESAAES MGRESGDVQS  240
FVSLLREKVK SEEPEEVEPG NGEDQSPAAT KRICAESRPL VECIEIIRSH KFGSFFERLD  300
ATKETPDYRR IVRQHTDLET IRTRLEENWY SGSNSSFFHD LLLLFNNVIV FFDKNSSESA  360
AAVELRQIVL KAMTRNTFDP NSSMREQYLE FAAAQNVKLD VQSSDFLLSK PNILAPLIAC  420
RKRSSITAKR AVSLSSSLEA KKKEHTESSI GKNTVPSSVK SDDDCRATKK RTRERSASGS  480
GNSSKNRKTR DNMKTKKNLD VDIDADDSSD VEETECENSQ RKNKANVNAK KRSAEIFLSR  540
ITRSSTLKDF VISSEDGKGE RAEQKKKAEH KKKKGNGKID AKKEQIVQKR SGGKKGEEME  600
GPVKKNGGRL TKRGAVPVAV GAEVSRGKRR KESVQARKRS RK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.72040.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429854.20.0uncharacterized protein LOC18038098
TrEMBLV4UTX90.0V4UTX9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006429854.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.18e-73DNA-binding bromodomain-containing protein