PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012843m
Common NameCICLE_v10012016mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 195aa    MW: 22623.9 Da    PI: 8.6586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012843mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.6e-061640123
                     EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                     ++C+  dC+ s++rk++L+rH+ +H
  Ciclev10012843m 16 FRCSvdDCHASYRRKDHLTRHLLRH 40
                     89*********************99 PP
2zf-C2H216.42.6e-054570123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                     +kCp  +C++ F+ + n+krH +  H
  Ciclev10012843m 45 FKCPieNCNREFTIQGNMKRHVKElH 70
                     89********************9986 PP
3zf-C2H219.33e-0685109123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk+F+  s L++H  +H
  Ciclev10012843m  85 YICQeiGCGKVFKYASKLRQHEDSH 109
                      89*******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-91342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-61342No hitNo description
PROSITE profilePS501579.8271645IPR007087Zinc finger, C2H2
SMARTSM003550.00661640IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801840IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-64367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.16E-74371No hitNo description
SMARTSM003550.00154570IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6374576IPR007087Zinc finger, C2H2
PROSITE patternPS0002804771IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-877109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.56E-681109No hitNo description
SMARTSM003550.003385109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2485114IPR007087Zinc finger, C2H2
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
SMARTSM003553.6117142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119142IPR007087Zinc finger, C2H2
SMARTSM0035520145166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQWITADSFD LLQRPFRCSV DDCHASYRRK DHLTRHLLRH QGKLFKCPIE NCNREFTIQG  60
NMKRHVKELH HEGTTSTDSG DQKQYICQEI GCGKVFKYAS KLRQHEDSHV NLDSVEAFCS  120
APGCMKYFTN KQCLEAHIRS CHQYIPCEIC GSMQLKKNIK RHVRTHEARD LSERIKCQFK  180
GCLLSFSTVR SSDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A7e-11416610156Aart
2i13_B7e-11416610156Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430925.11e-128transcription factor IIIA isoform X1
TrEMBLV4UWQ21e-143V4UWQ2_9ROSI; Uncharacterized protein
STRINGXP_006430925.11e-128(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-49transcription factor IIIA