PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012534m | ||||||||
Common Name | CICLE_v10012534mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GeBP | ||||||||
Protein Properties | Length: 257aa MW: 29951.3 Da PI: 9.4472 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 79.8 | 4.3e-25 | 47 | 141 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +f+r+w+e Dei +LqGl+d a+ g d+ fye +++ +s +sk ql+eK+rrL+kKf+ ++++++g +++ + hd++ fels+k+ Ciclev10012534m 47 KFHRIWTEPDEIRFLQGLLDS-ASLGLTFPRDLPIFYERFSNAMSQPYSKYQLSEKLRRLRKKFRVTSARISRGLNVTHLNFHDRNLFELSMKL 139 699*****************8.889999999*************************************************************** PP DUF573 96 Wg 97 W Ciclev10012534m 140 WS 141 *7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-26 | 48 | 141 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDSLKPSSAS KSKLPIKRKS EQSHNQDQSI TTVDFTDPTN INPPPFKFHR IWTEPDEIRF 60 LQGLLDSASL GLTFPRDLPI FYERFSNAMS QPYSKYQLSE KLRRLRKKFR VTSARISRGL 120 NVTHLNFHDR NLFELSMKLW SPECLPTSPF GKISVCGGNV DVDFSSCGRK EKETIEEVAV 180 ARSVLDVFDE CLKEVRMIVA NQPKEEREKD FERRWREQRF AEFDVLTRRL RMKLCEVQTV 240 VLAYFKNNNI NLYLCT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430559.1 | 0.0 | probable transcription factor At4g00390 | ||||
TrEMBL | V4UVS3 | 0.0 | V4UVS3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430559.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18042 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-17 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012534m |
Entrez Gene | 18039721 |