PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012372m

Common Name

CICLE_v10012372mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 288aa MW: 32745.8 Da PI: 7.3613

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012372m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.7e-27	118	207	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+Y+ ++GF +r+++ ++skr+g+i+++ +vC+keg+r++ +++ ++k+ r r+ tr+gCka++ v+k++ gkw+vtk+++eH+H+l+ Ciclev10012372m 118 FYNAYGMRLGFITRINYRTRSKRDGSIISQSLVCNKEGYRKPPSSRhEVKSIRLRPPTRVGCKAMISVRKMSFGKWVVTKFVKEHTHALS 207 **************************************99887747788899********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-25	118	207	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDSRHGMGIQ LKQNDKDAQD KVSDDANDNE QEDSVLYSEI QLEQNSYEII GGTHFITTDN 60 EAHLGNEGMA IGSSVEMVSQ VEKNDKMTHS SGVQLNTVCG DEPYVGQEFE SVAAAHAFYN 120 AYGMRLGFIT RINYRTRSKR DGSIISQSLV CNKEGYRKPP SSRHEVKSIR LRPPTRVGCK 180 AMISVRKMSF GKWVVTKFVK EHTHALSTTQ GQTTVLYRQI VSEDWRVEEL TQQLIIERKR 240 SASLRRCLDL LFNHIEEHIQ DLSKKIQYIV DNVDKIESEG KIHRNPR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	RTRSKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024037482.1	1e-166	protein FAR1-RELATED SEQUENCE 3 isoform X2
TrEMBL	V4SMP4	0.0	V4SMP4_9ROSI; Uncharacterized protein
STRING	XP_006428702.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22968	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-66	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10012372m
Entrez Gene	18039944