PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012046m
Common NameCICLE_v10012046mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 360aa    MW: 41166.2 Da    PI: 5.6774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012046mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0690113226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k  lC f+ + G+C+ G +CkF+H+
  Ciclev10012046m  90 KSILCEFYKA-GQCQKGFKCKFSHD 113
                      6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.17888115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-688113IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-588114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953158196IPR000571Zinc finger, CCCH-type
SMARTSM003564.5158195IPR000571Zinc finger, CCCH-type
PfamPF165431.0E-19215295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQNVQPKPD QSKVAAKKKK  60
EEEKAKEKEL NDLFKIAVSQ PKVPVGVDPK SILCEFYKAG QCQKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DKETMEDWDQ ETLEKVVESK NKEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEAEKITIEE EIENQRAKIT TTTPMTPELF  240
TEWKKKKIAE RDAGLAAERA ERAKNDRMSG RELFLSDSSW FVDDAEAYDK YQREEESHVT  300
EQKANGNSAR DGPSNSAKAG QEDEVVPDDD DELDMDELNE LEASLAKTSI QIQDPSNGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.225170.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428906.10.0zinc finger CCCH domain-containing protein 11
RefseqXP_006480570.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A067ELT90.0A0A067ELT9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PE220.0A0A2H5PE22_CITUN; Uncharacterized protein
TrEMBLV4SY960.0V4SY96_9ROSI; Uncharacterized protein
STRINGXP_006480570.10.0(Citrus sinensis)
STRINGXP_006428906.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-153C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]