PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011984m | ||||||||
Common Name | CICLE_v10011975mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GeBP | ||||||||
Protein Properties | Length: 375aa MW: 41257.7 Da PI: 5.0643 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 108.6 | 4.6e-34 | 158 | 254 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 lfqrlwse+Dei++L+ +i++ +++g +ps+d++afy++vk+s++ +++k ql++KirrLKkK ++ +k ak+g +fs++h+q +++lskk Ciclev10011984m 158 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLTKsAKKGGVRTFSNPHEQRAYDLSKK 251 79***************************************************************99999789999****************** PP DUF573 95 iWg 97 +W+ Ciclev10011984m 252 LWE 254 **7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-30 | 159 | 254 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MAPKKPNPRE EPPAASSSAE EEEEEEDDSS GSELEVSSSS SDDDGEEEEK DTQGQDHATT 60 MLPKTQKQPA LKKPEATAQT KAPSSESESE SESGSEPGAS PKPSEAMKPT SSKRPNEAEN 120 KEAANAKDSK RAKKNGGADE ELHKKEPGED TKKQQPPLFQ RLWSEDDEII VLKRMIEYST 180 EKGIDPSQDT QAFYDYVKNS LHGDYTKAQL MDKIRRLKKK CVNNLTKSAK KGGVRTFSNP 240 HEQRAYDLSK KLWEGSEEST GGVMALSAAK SYKKNQSQRG NNELLAALKA ELLGEEGAVG 300 DKKGNAAVFF DKTLGVAGLE EFVLHDGFNM ISGAKKAELE ERWKNLQVAQ LKLFLQRNEL 360 IKEQALLILE ASRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428646.1 | 0.0 | probable transcription factor At1g11510 isoform X1 | ||||
TrEMBL | V4SXI6 | 0.0 | V4SXI6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428646.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 3e-27 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011984m |
Entrez Gene | 18038063 |