PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011975m
Common NameCICLE_v10011975mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 378aa    MW: 41588.1 Da    PI: 5.0643
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011975mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.54.6e-34158254297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                      lfqrlwse+Dei++L+ +i++ +++g +ps+d++afy++vk+s++ +++k ql++KirrLKkK  ++ +k ak+g   +fs++h+q +++lskk
  Ciclev10011975m 158 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLTKsAKKGGVRTFSNPHEQRAYDLSKK 251
                      79***************************************************************99999789999****************** PP

           DUF573  95 iWg 97 
                      +W+
  Ciclev10011975m 252 LWE 254
                      **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-30159254IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAPKKPNPRE EPPAASSSAE EEEEEEDDSS GSELEVSSSS SDDDGEEEEK DTQGQDHATT  60
MLPKTQKQPA LKKPEATAQT KAPSSESESE SESGSEPGAS PKPSEAMKPT SSKRPNEAEN  120
KEAANAKDSK RAKKNGGADE ELHKKEPGED TKKQQPPLFQ RLWSEDDEII VLKRMIEYST  180
EKGIDPSQDT QAFYDYVKNS LHGDYTKAQL MDKIRRLKKK CVNNLTKSAK KGGVRTFSNP  240
HEQRAYDLSK KLWEGSEEST GGVMALSAAK SYKKNQSQRG NNELLAALKA ELLGEEGAVG  300
DKKGNAAVFF DKTLGVAGLE EFVLHDGFNM ISGAKKAELE ERWKNLQVAQ LKLFLQRNEL  360
IKEQALLILE ASRKTTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428646.10.0probable transcription factor At1g11510 isoform X1
TrEMBLV4SXI60.0V4SXI6_9ROSI; Uncharacterized protein
STRINGXP_006428646.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-27DNA-binding storekeeper protein-related transcriptional regulator