PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011915m | ||||||||
Common Name | CICLE_v10011915mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 44703.9 Da PI: 9.7053 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6e-17 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l+ +vkq+G++ W++I+++mg ++R +k+c +rw +yl Ciclev10011915m 4 RQRWQPEEDAILKAYVKQYGPKEWNLISQRMGktLNRDPKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.9 | 7.4e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + Ciclev10011915m 59 KGSLSPEEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.052 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.01E-22 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-9 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.1E-15 | 7 | 69 | No hit | No description |
SMART | SM00717 | 9.4E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.326 | 58 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-15 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.00E-6 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MKERQRWQPE EDAILKAYVK QYGPKEWNLI SQRMGKTLNR DPKSCLERWK NYLKPGIKKG 60 SLSPEEQSLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKQ LHKEKQRREY 120 SDQQQEGNVP VVGLGSGSCS SPEKVAQGRY DHILETFAEK YVQPKLFAMQ ALNLNLNPVP 180 ANAIMPNLPL GGADPEPVLS LGSGPTWMNN HNHNHNHHTS GSSLTSSTSS TTTASPSVSL 240 SLSPSEPGIE LGDMNPVARF MPGPQVGTLV QYCKELEEGR QSWVQHKKEA TWRLSRLEQQ 300 LESEKARKRR EKMDEIETKI RALREEELSH LGRIESEYKE QLSALQRDAE SKEAKLMEAW 360 CSRHVKLLKL VEQIGVHQSS TSHGFCVVPK DMH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-15 | 11 | 130 | 9 | 127 | MYB3 |
3zqc_D | 4e-15 | 11 | 130 | 9 | 127 | MYB3 |
3zqc_G | 4e-15 | 11 | 130 | 9 | 127 | MYB3 |
3zqc_J | 4e-15 | 11 | 130 | 9 | 127 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 311 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Preferential expression in young and immature plant tissues. In embryos, expressed from the late globular stage onwards. After germination, detected in leaf founder cells and on flowering, in primordia of all floral organs. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers, siliques and in lateral organ promordia (PubMed:17559509). Found in the inner domain between the adaxial and abaxial domains of leaves (PubMed:17559509). Expressed in the phloem tissues of leaves, cotyledons, hypocotyls, and roots (PubMed:21950734). {ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:21950734}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 2 (LBD6/AS2) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis (PubMed:11076771, PubMed:11140682, PubMed:11882937, PubMed:12750468, PubMed:16006579, PubMed:16699177, PubMed:17395603, PubMed:17559509, PubMed:23271976). Binds directly to KNAT1, KNAT2, and KNATM chromatin, regulating leaf development (PubMed:23271976). LBD6 is required for this binding (PubMed:23271976). Positive regulator of flowering that binds to the promoter of FT (PubMed:21950734). Regulates FT expression by forming a functional complex with CO (PubMed:21950734). Involved in leaf polarity establishment by functioning cooperatively with NUCL1 to repress abaxial genes ARF3, ARF4, KAN1, KAN2, YAB1 and YAB5, and the knox homeobox genes KNAT1, KNAT2, KNAT6, and STM to promote adaxial development in leaf primordia at shoot apical meristems at high temperatures (PubMed:27334696). {ECO:0000269|PubMed:11076771, ECO:0000269|PubMed:11140682, ECO:0000269|PubMed:11882937, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16699177, ECO:0000269|PubMed:17395603, ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:23271976, ECO:0000269|PubMed:27334696}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with an afternoon peak in long days and with a broad night peak in short days (PubMed:21950734). Expression of AS1 in stem cells of the shoot apical meristem is prevented by SHOOT MERISTEMLESS (STM). Expression is activated by GTE6 during leaf morphogenesis (PubMed:16166385). {ECO:0000269|PubMed:16166385, ECO:0000269|PubMed:21950734}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF592210 | 1e-55 | EF592210.1 Mangifera indica clone MiIIHR30 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430817.1 | 0.0 | transcription factor AS1 | ||||
Swissprot | O80931 | 1e-103 | AS1_ARATH; Transcription factor AS1 | ||||
TrEMBL | V4STI9 | 0.0 | V4STI9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430817.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6186 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 7e-58 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011915m |
Entrez Gene | 18039983 |