PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011872m | ||||||||
Common Name | CICLE_v10011741mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 44515.3 Da PI: 8.6906 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 18 | 44 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Ciclev10011872m 18 PGEPDCSYYIRTGLCRFGATCRFNHPP 44 5789*********************97 PP | |||||||
2 | zf-CCCH | 40.3 | 5.2e-13 | 64 | 89 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Ciclev10011872m 64 GQPECQYYLKTGTCKFGATCKFHHPR 89 5799********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.6e-12 | 113 | 135 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Ciclev10011872m 113 ECAYYLRTGQCKFGSTCKFHHPQ 135 7********************97 PP | |||||||
4 | zf-CCCH | 38 | 2.7e-12 | 270 | 296 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Ciclev10011872m 270 PGQPECQFYMKTGDCKFGAVCRFHHPR 296 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.4e-13 | 316 | 342 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Ciclev10011872m 316 PGEPLCIFYSRYGICKFGPSCKFDHPM 342 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 17 | 44 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 22 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 66 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-5 | 68 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 113 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 114 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-9 | 271 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 275 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 317 | 342 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 318 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 320 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MNLRTNEAME SGSLPERPGE PDCSYYIRTG LCRFGATCRF NHPPNRKLAI ATARIKGDYP 60 ERLGQPECQY YLKTGTCKFG ATCKFHHPRD KAGIAGRVSL NVLGYPLRPN EIECAYYLRT 120 GQCKFGSTCK FHHPQPNNMM VSLRGSPVYP TVQSPTTPSQ QSYAGGITNW SRASFIPSPR 180 WQGPSSYAPM LLPQGMVSVP GWNTYSGQLG SVSSSENLQQ TSGNSQIYGA SRQTEPSNSG 240 SQGTMSPFRS GSIPVGFYAL QRESVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLL 300 PVPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS ASSSADAPVR 360 RFLGSSSATG ALNLSSEGLV EAGSGRRLSL PETRQMSSGD DEIDTEG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.19836 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480413.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024037223.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_024955986.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024955987.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | V4UQN0 | 0.0 | V4UQN0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480413.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006428579.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-177 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011872m |
Entrez Gene | 18038207 |