PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011746m | ||||||||
Common Name | CICLE_v10011741mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 440aa MW: 47859 Da PI: 8.512 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 50 | 76 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Ciclev10011746m 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76 5789*********************97 PP | |||||||
2 | zf-CCCH | 40.2 | 5.8e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Ciclev10011746m 96 GQPECQYYLKTGTCKFGATCKFHHPR 121 5799********************96 PP | |||||||
3 | zf-CCCH | 36.9 | 6.1e-12 | 145 | 167 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Ciclev10011746m 145 ECAYYLRTGQCKFGSTCKFHHPQ 167 7********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Ciclev10011746m 302 PGQPECQFYMKTGDCKFGAVCRFHHPR 328 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 5.9e-13 | 348 | 374 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Ciclev10011746m 348 PGEPLCIFYSRYGICKFGPSCKFDHPM 374 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 100 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 145 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 305 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 349 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 350 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 352 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MQFEAGISLS RGAAVTEGPS LSPSLNQDAL WQMNLRTNEA MESGSLPERP GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARIKGD YPERLGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV SLNVLGYPLR PNEIECAYYL RTGQCKFGST CKFHHPQPNN MMVSLRGSPV 180 YPTVQSPTTP SQQSYAGGIT NWSRASFIPS PRWQGPSSYA PMLLPQGMVS VPGWNTYSGQ 240 LGSVSSSENL QQTSGNSQIY GASRQTEPSN SGSQGTMSPF RSGSIPVGFY ALQRESVFPE 300 RPGQPECQFY MKTGDCKFGA VCRFHHPRER LLPVPDCVLS PIGLPLRPGE PLCIFYSRYG 360 ICKFGPSCKF DHPMGIFTYN LSASSSADAP VRRFLGSSSA TGALNLSSEG LVEAGSGRRL 420 SLPETRQMSS GDDEIDTEG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.19836 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480413.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024037223.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like | ||||
Refseq | XP_024955986.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_024955987.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | V4UQN0 | 0.0 | V4UQN0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480413.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006428579.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011746m |
Entrez Gene | 18038207 |