PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011741m
Common NameCICLE_v10011741mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 440aa    MW: 47859 Da    PI: 8.512
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011741mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115076127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Ciclev10011741m 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76
                     5789*********************97 PP
2zf-CCCH40.25.8e-1396121227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  Ciclev10011741m  96 GQPECQYYLKTGTCKFGATCKFHHPR 121
                      5799********************96 PP
3zf-CCCH36.96.1e-12145167527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      +C +++rtG+Ck+G++CkF+H++
  Ciclev10011741m 145 ECAYYLRTGQCKFGSTCKFHHPQ 167
                      7********************97 PP
4zf-CCCH37.93e-12302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G+ C+F+H++
  Ciclev10011741m 302 PGQPECQFYMKTGDCKFGAVCRFHHPR 328
                      5789*********************96 PP
5zf-CCCH40.15.9e-13348374127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Ciclev10011741m 348 PGEPLCIFYSRYGICKFGPSCKFDHPM 374
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874977IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-55477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-45575IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.41394122IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-1097121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5100121IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6143168IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9145167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596301329IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6305331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5307329IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709347375IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4352372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQFEAGISLS RGAAVTEGPS LSPSLNQDAL WQMNLRTNEA MESGSLPERP GEPDCSYYIR  60
TGLCRFGATC RFNHPPNRKL AIATARIKGD YPERLGQPEC QYYLKTGTCK FGATCKFHHP  120
RDKAGIAGRV SLNVLGYPLR PNEIECAYYL RTGQCKFGST CKFHHPQPNN MMVSLRGSPV  180
YPTVQSPTTP SQQSYAGGIT NWSRASFIPS PRWQGPSSYA PMLLPQGMVS VPGWNTYSGQ  240
LGSVSSSENL QQTSGNSQIY GASRQTEPSN SGSQGTMSPF RSGSIPVGFY ALQRESVFPE  300
RPGQPECQFY MKTGDCKFGA VCRFHHPRER LLPVPDCVLS PIGLPLRPGE PLCIFYSRYG  360
ICKFGPSCKF DHPMGIFTYN LSASSSADAP VRRFLGSSSA TGALNLSSEG LVEAGSGRRL  420
SLPETRQMSS GDDEIDTEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.198360.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV4UQN00.0V4UQN0_9ROSI; Uncharacterized protein
STRINGXP_006480413.10.0(Citrus sinensis)
STRINGXP_006428579.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1