PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010745m
Common NameCICLE_v10010745mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 340aa    MW: 39432.6 Da    PI: 7.1307
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010745mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-0694112422
                      ---SGGGGTS--TTTTT-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCk 22 
                      + C+f+++ G C++G rC+
  Ciclev10010745m  94 AYCPFHLKIGACRFGQRCN 112
                      67****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.54590118IPR000571Zinc finger, CCCH-type
PRINTSPR018483.0E-1096115IPR009145U2 auxiliary factor small subunit
PRINTSPR018483.0E-10115135IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.33E-10142192IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.3E-13142189IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501038.653193223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
QKENECDEDD DWEYVEEGPA EIIWQGNEII IRKKKVRVPK KDANPLSKKE DVDRPTSNPR  60
PPQSEAFADH QNAQQALETV AQQVPNFGTE HDKAYCPFHL KIGACRFGQR CNIVHFYPDK  120
SCTLLIKNMY NGLGLAWEQD ERLEVCRNGS SHLRGNVYVH YKSLESAVLA YHSVNGRYFA  180
GKQITCEFIN VTRWKIAICG EYMKSRLNTC SCGMACNFIH YFPNPSGDYE WADWDKPPPR  240
YWVKKMTALF GYSDESGTWN QERSGQTRNK IDSTNADRHH YRRSRSREAD IVKSGSGRSH  300
DDERQVHETT WSRRRSNYHS ESRSDEVNFD GSWSDRDRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.26906e-87flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033131.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ9SY741e-135C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLV4TU690.0V4TU69_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006450833.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59752025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-127C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]