PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010403m
Common NameCICLE_v10010403mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 323aa    MW: 37055.9 Da    PI: 7.5279
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010403mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.6e-104390154
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     s++kGV    ++g W A+I+       + +r++lg+f ++++Aa a++ a+ +l+
  Ciclev10010403m 43 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIRLR 90
                     799***6.666899****999......44**********99***********998 PP
2B388.65.1e-28166262185
                      EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+k+ltpsdv+k++rlv+pkk+a ++            +++k+ +++l + d+s + W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D++ F
  Ciclev10010403m 166 FQKELTPSDVGKLNRLVIPKKYAVKYfpqiserveehaENDKADDVQLDFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICF 259
                      99********************************999988899*************************************************** PP

                      EE- CS
               B3  83 kld 85 
                      +l 
  Ciclev10010403m 260 YLC 262
                      975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-44390IPR001471AP2/ERF domain
CDDcd000184.00E-2343101No hitNo description
SuperFamilySSF541715.36E-1543100IPR016177DNA-binding domain
SMARTSM003804.3E-1844105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-164499IPR001471AP2/ERF domain
PROSITE profilePS5103216.9634499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-33163265IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-25165261No hitNo description
SuperFamilySSF1019364.05E-27165263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.999166280IPR003340B3 DNA binding domain
PfamPF023625.8E-26166262IPR003340B3 DNA binding domain
SMARTSM010191.9E-22166280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRFRHTS AVSKFKGVVP QQNGHWGAQI  60
YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI  120
NMIRDGSYSS RFADFLRSHS RTLEEDVIFT QMRAGTDGWM MCRQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPQISERVE EHAENDKADD VQLDFHDKSM KLWKFRYCYW KSSQSFVFTR  240
GWNRFVKENQ LKANDTICFY LCELRDIAKG TKTFCMIDAN KGENGGASAE VSGPYVDMKV  300
DLQLQLGQNI VDDKKENSCL TY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2816528513130DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453664.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-103RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLV4WJE70.0V4WJE7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006453664.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-105RAV family protein