PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10009521m | ||||||||
Common Name | CICLE_v10009521mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23119.1 Da PI: 9.1747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.4 | 1e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l++a++ +G++ Wk++a++ g++R++k+c++rw +yl Ciclev10009521m 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ciclev10009521m 68 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.447 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-30 | 14 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-19 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.13E-12 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.918 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVTVSSQCTK KEANRGAWTA EEDQKLAQAI EVHGPKKWKS VAAKAGLNRC GKSCRLRWMN 60 YLRPHIKRGN ISDQEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIKQN 120 EKPSRGSTAK DLELEISKGE EKGSTVQKRS GDLEGTSYAD GGSKLFSFVG DNKFFDCYND 180 EPLNLEWMSR FFEIDESWFD FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB573149 | 0.0 | AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453005.1 | 1e-149 | transcription factor MYB114 | ||||
Swissprot | Q38850 | 6e-54 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | V4UPP3 | 1e-148 | V4UPP3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006453005.1 | 1e-149 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-56 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10009521m |
Entrez Gene | 18055308 |
Publications ? help Back to Top | |||
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