PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10009250m | ||||||||
Common Name | CICLE_v10009250mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 259aa MW: 28839.4 Da PI: 8.5655 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.2e-27 | 98 | 158 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k+++ pr+Y+rC +a gCpvkkkv+r+ ed+++++ tYegeHnh+ Ciclev10009250m 98 VKDGHQWRKYGQKVTKDNPSPRAYFRCLMAssGCPVKKKVQRCMEDKSFLVATYEGEHNHD 158 58*************************98888****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-28 | 90 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.796 | 93 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 96 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-30 | 98 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 99 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MDSHNSPKEK MKLLQAKLEH VRKQNENLRH LVEAMNNQCN DLLARIHEAN RTYSSSDHHH 60 FNNNINIGGV TAQVPPVPNA KQSRIFVKAD SKDSSLIVKD GHQWRKYGQK VTKDNPSPRA 120 YFRCLMASSG CPVKKKVQRC MEDKSFLVAT YEGEHNHDVQ CSSLGQSSSL TNYCSPKSSI 180 VHCPDYQTTD SFGSDVTLDL TLSGSNQETR PPRNLMQVCD DKKKIEEYVA SLTKDPSFTI 240 AVADAVASSI NGPPHRPM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-20 | 97 | 159 | 13 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ccl.6577 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ819955 | 0.0 | KJ819955.1 Citrus japonica WRKY40 (WRKY40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450292.1 | 0.0 | WRKY transcription factor WRKY76 | ||||
Refseq | XP_024034155.1 | 0.0 | WRKY transcription factor WRKY76 | ||||
TrEMBL | V4UBV8 | 0.0 | V4UBV8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006450292.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15610 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-39 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10009250m |
Entrez Gene | 18053739 |