PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008851m
Common NameCICLE_v10008851mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 339aa    MW: 37824.3 Da    PI: 7.611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008851mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-0891116127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  f   G C+ G++C+FaHg+
  Ciclev10008851m  91 FKTRLCAKFKH-GACRNGENCNFAHGM 116
                      69*******99.*************95 PP
2zf-CCCH29.71.1e-09154177225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k++lC+ f+ + +C+yGdrC+F H
  Ciclev10008851m 154 KMKLCKKFYNGEECPYGDRCNFLH 177
                      789*******66************ PP
3zf-CCCH36.48.5e-12230255127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  + + G+C++G++C+FaHg+
  Ciclev10008851m 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
                      8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1486123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-888121IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.22590117IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-691116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333152180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7152179IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4152179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9154178IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7154177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-16225259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9226259IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5229255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751229256IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9230255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSFPNSSSPF LAQELQSYSA GSDAIGVWPQ FSMSDEQQYD RLSQYDQQPP FKRPRNYEDN  60
ESNSATYPPM NPRMNPSMNL PINKGITNIF FKTRLCAKFK HGACRNGENC NFAHGMEDLR  120
QPPPNWQELV GGGRAEEDRS SGGNWDDDQK IIHKMKLCKK FYNGEECPYG DRCNFLHEDP  180
AKFRDDSGRY RESSAISIGT TGPPVVTGSC SNQAEGNRPV GSNCVKPVYW KTKLCIKWTQ  240
GQCPFGEKCH FAHGQSELQV IGGRTEGEAG NPSFISVKPQ LVPANDSSPT AVLPTLNKEG  300
QGKQCLFKWK GPKKINRIYA DWLDDMPLAH NLPSQVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450980.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_006475808.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-102C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A067GXY10.0A0A067GXY1_CITSI; Uncharacterized protein
TrEMBLA0A2H5PDY30.0A0A2H5PDY3_CITUN; Uncharacterized protein
TrEMBLV4UJ220.0V4UJ22_9ROSI; Uncharacterized protein
STRINGXP_006475808.10.0(Citrus sinensis)
STRINGXP_006450980.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-99C3H family protein