PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008690m
Common NameCICLE_v10008690mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 373aa    MW: 41096.5 Da    PI: 6.5915
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008690mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17258292135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Ciclev10008690m 258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.7E-7716349IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558252288IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18252302IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14253289IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-15253316No hitNo description
CDDcd002022.01E-13257304No hitNo description
PfamPF003201.4E-15258292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEVPEFFQGS YCAQFSAEKH HSLDSNKSSN GGDHFIVEEL LDFSNEDAIL TDAAAFDDVT  60
ANSTDSSTVT VVDSCNSSSF SGCGPNFPGE NNGCRNFSDA HFSGDLCVPY DDLAELEWLS  120
NIVEESFSCE DLQKLQLISG MKARSDHSSE TCQFQPGTNR INHGSTNTSN NTNANPNNPV  180
FNPEMAVPAK ARSKRSRAAP CSWASRLLVL SPPESTSEPE IIPTGLPPPP LQGKKSVKAC  240
GSKKKDSGDE GNGEGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA  300
SPTFVLTKHS NSHRKVLELR RQKELQRAQQ QQHQQQQFMH HHHHHQNMMF DLSNGDDYLI  360
HQHVGPDFRQ LI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450704.10.0GATA transcription factor 12
SwissprotP697814e-97GAT12_ARATH; GATA transcription factor 12
TrEMBLV4WC040.0V4WC04_9ROSI; GATA transcription factor
STRINGXP_006450704.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-77GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]