PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008633m
Common NameCICLE_v10008633mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 382aa    MW: 42413.4 Da    PI: 6.7724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008633mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08137157526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck Gd C FaHg
  Ciclev10008633m 137 ACPDFRK-GSCKKGDACEFAHG 157
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-5132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6136159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6137157IPR000571Zinc finger, CCCH-type
SMARTSM003562167190IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.113167191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMLGEAHRPN PTILVPPWPQ LPDDPTADNI FSPHSLNSNA NGSPEYSNLY HIPETYAALH  60
RYLPSNDPDL DSDSDMSGLD PDSPVDAYSC DHFRMYEFKV RKCARGRSHD WTECPYAHPG  120
EKARRRDPRK YHYSGTACPD FRKGSCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGGGCK  180
RRVCFFAHTP DQLRILPQQS PRSASASDSP SCAKTLPFLS SPESASPPPS PRTESPMSHS  240
LSRSLGTSSI NEMMASFRNL QLGKVKSLPS SWNMQVGGVG GSPGYGSPRG SMLRPGFCSL  300
PSTPTRTPTR PGIGYPDIFN TCWEEEEEEP VMERVESGRD LRAKMFERLS KENSLERVDP  360
YPTNAVDPDL GWITELVNEA K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033892.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-144C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLV4UEU90.0V4UEU9_9ROSI; Uncharacterized protein
STRINGXP_006451362.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.14e-93C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]