PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007849m
Common NameCICLE_v10007849mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 576aa    MW: 62376.4 Da    PI: 8.0249
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007849mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15199258155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Ciclev10007849m 199 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 258
                      57*******************666664477446*************************98 PP
2AP2476.2e-15301352155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Ciclev10007849m 301 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 352
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-22199268No hitNo description
SuperFamilySSF541711.5E-17199268IPR016177DNA-binding domain
PfamPF008473.4E-12199258IPR001471AP2/ERF domain
SMARTSM003804.6E-30200272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-16200267IPR001471AP2/ERF domain
PROSITE profilePS5103219.23200266IPR001471AP2/ERF domain
PRINTSPR003672.6E-6201212IPR001471AP2/ERF domain
CDDcd000181.16E-24301362No hitNo description
PfamPF008477.7E-10301352IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18301362IPR016177DNA-binding domain
PROSITE profilePS5103219.045302360IPR001471AP2/ERF domain
SMARTSM003801.5E-33302366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-18302361IPR001471AP2/ERF domain
PRINTSPR003672.6E-6342362IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MNNNNNNNMN VNLSSSSSSS NSINMDHSAW LGFSLSNNNL QTSSTSDPES SHICLFEAFT  60
TAATATTASG STINLARGGG GEATGIASAT DLSIFTGSPK LEDFLGGSCT ATPPQPPQVQ  120
LGHHHLSSAT TAHDIYDSEL KTIAASFLRG FATEQTDIHH QQQQQQQHLK HHHHQQQLVP  180
LVAQPAPKKT VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD  240
KEEKAARAYD LAALKYWGPT TTTNFPVSNY EKELEDMKNM TRQEFVASLR RKSSGFSRGA  300
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  360
MSRYDVKSIA NSNLPIGGIT GKSKNSSESV SDCKSLDGGS RSDDRDISSA SSHLAAFASS  420
HPATSTLSFA LPIKQDPSAD YWSNLLGYQN NTTATPLTNA KCLSIAPTYL QSPTSSPSFN  480
VDFAANPSSA VNESSNNGLF NVGNYLQQQQ QQGGVTNSTT TTTTSAHTGS SNIPFATPIG  540
LNSNSYESWI SPSLHSFQTA KPSLSVFQTP IFGME*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453360.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X1
RefseqXP_006474192.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-161AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLV4UQK40.0V4UQK4_9ROSI; Uncharacterized protein
STRINGXP_006474192.10.0(Citrus sinensis)
STRINGXP_006453360.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-146AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]