PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007805m
Common NameCICLE_v10007805mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 595aa    MW: 65147.4 Da    PI: 4.9623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007805mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017433455123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C +C+ksF  +  L  H  +H
  Ciclev10007805m 433 YSCLICNKSFDKHQALGGHVASH 455
                      99*********999999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559295115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80395132IPR007087Zinc finger, C2H2
SuperFamilySSF576677.84E-695117No hitNo description
PfamPF139124.4E-896115IPR007087Zinc finger, C2H2
SuperFamilySSF576677.84E-6150177No hitNo description
PfamPF139121.3E-4155179IPR007087Zinc finger, C2H2
SMARTSM003550.28155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-7432455No hitNo description
PfamPF139121.7E-4433456IPR007087Zinc finger, C2H2
SMARTSM003550.17433455IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492433460IPR007087Zinc finger, C2H2
PROSITE patternPS000280435455IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-7504531No hitNo description
PfamPF139129.1E-12509532IPR007087Zinc finger, C2H2
SMARTSM003550.06509531IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224509531IPR007087Zinc finger, C2H2
PROSITE patternPS000280511531IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MAEEDQEDQE QPLPAAVAVE AAQEKPNQLV SEADDDTEIT KGSSLSLKLK IPITKPPAAA  60
AAEADDRQFM EEDLLLQREQ EQDQQDRGGV LGLPRTCSEC GKQFTSGKAL GGHKRACLQK  120
IKNGTTHNNQ NPRLIKKAVA VKLEEAGEEG NINNHICYVC HQSFRSVKSL YGHMRKHPER  180
EWRGVQPPKH YLLNHRRQHP SPSSSPTIHY RLSRDNRDHD HYDDDGYDVD GSMGSGGEDL  240
VESLRGWSAK RKRGQRLIMS SSSDEDEDED EEEAMQQAVS DLLLLAQLSA DDCNDNKEQR  300
GTFDHHRVVS SVDSGYGVLK IKDNNKIDDD NDEDDEREKK KGNVEMKDGN GLGFDNCNSE  360
DMWTVKKDYE GDEDAGSSDM DDQMMMMMMK KKQQKKNKRR RLNELDDAVL EGTTAGGGAL  420
KEEPVVMSTA QTYSCLICNK SFDKHQALGG HVASHNKNKN VKESSSASAA AEDSKGEDKL  480
AAAASDEENG ESSRELAAAA AAAGGSSEHK CNICNKIFPT GQALGGHKRC HWTGPAEAFS  540
SSSQVTTSAG EVTQRAPSPS RVVHDFDLND TPPEYYQFHG CEAAGPSAAA ATIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389400KKKQQKKNKRRR
2397401KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452771.10.0transcriptional regulator ATRX homolog
TrEMBLV4UTT60.0V4UTT6_9ROSI; Uncharacterized protein
STRINGXP_006452771.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-19C2H2 family protein