PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007292m
Common NameCICLE_v10007292mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 1098aa    MW: 120674 Da    PI: 6.6919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007292mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22132233199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Ciclev10007292m 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 221
                      99*****************************954.5444.48************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  Ciclev10007292m 222 EKQQLLLGIRRA 233
                      88889****997 PP
2Auxin_resp120.61.2e-39258341183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Ciclev10007292m 258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341
                      79********************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-43121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-41123247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-17131223No hitNo description
SMARTSM010192.0E-22132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787132234IPR003340B3 DNA binding domain
PfamPF023623.5E-20132233IPR003340B3 DNA binding domain
PfamPF065075.3E-35258341IPR010525Auxin response factor
PROSITE profilePS5174526.6389851069IPR000270PB1 domain
SuperFamilySSF542775.23E-79851063No hitNo description
PfamPF023093.4E-69861070IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKTPANTAGA ASNSGEGGGG EKKTINTELW HACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDIDGQI PNYPNLPSKL LCILLNVTLH ADTETDEVYA QMTLQPVPSY DREALLRSDL  120
ALKSNKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELMARDLHDN  180
IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPANL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVVPLAKYYK AVHSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG EKRNRVSIWE  360
IEPVTAPFFI CPPPFFRSKH PRQADDDASD LDNVFKRTMP WIGDDFGVKD SQSLPGLSLV  420
QWMNMQQNPS LANAMQSSYM HSLPGSILQN LNGGLSQMPQ QNNLQYTGQS LPQQVPQIDQ  480
LAKLPSTVNP LGSNILPQQP LGDISQQSRQ NMITQNLPSG PVQAQVLQPQ NLVQTSNILQ  540
QQPSIQNPQL PANLPQNLQQ QQQQQHIMGQ NQQQNLMQTQ LPDPINQNLQ MSDKQIQLHL  600
LQKLQQQRQS LLSQQSALQQ PAQLIQLQDQ QRQLLDASQS FSRSGTPTQM LEMHQVTPTS  660
LPQSNIMSQQ IANSGSLNNV QFSQPPQQPK LEQQQPGILP QMPGHMGLPA SHIINPVSTA  720
GNSALTGAAG VGQSVITDDN PSCSTSPSTN NCQRLIQPTI NSRTHRSAGI GEEVAQSASA  780
LLNPSALETM PSNANLVKDL PHKSDVKPSV NISKTQNQGF FTPQTYLNGA ATQTDYLDTS  840
SSTTSVCLSQ NDVHLQQNNN SLSYNLQSTL RDTSQVGEVP VDPRSNIPYG ANIDGPLGSM  900
NPDPLLTKGM MGLGKDFSNN ISSGAMLANY ENSKDAQQEL SSSIVSQSFG VPDMAFNSID  960
STINDSSFLN GGPWAPPPQF PQRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG  1020
IEGQLEDRGR IGWKLVYVDH ENDVLLVGDD PWKEFVNCVR CIKILSPQEV QQMSLDGDFG  1080
NSVLPHQACS SSDNGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691936245388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453190.20.0LOW QUALITY PROTEIN: auxin response factor 19
RefseqXP_006474325.20.0LOW QUALITY PROTEIN: auxin response factor 19-like
TrEMBLV4UQ480.0V4UQ48_9ROSI; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19