PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007069m
Common NameCICLE_v10007069mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 381aa    MW: 42597.7 Da    PI: 8.9988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007069mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-20202251356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Ciclev10007069m 202 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 251
                      8******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.29E-32200259No hitNo description
SMARTSM003801.3E-36201264IPR001471AP2/ERF domain
PROSITE profilePS5103222.682201258IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31201259IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23201259IPR016177DNA-binding domain
PRINTSPR003675.7E-11202213IPR001471AP2/ERF domain
PfamPF008475.9E-14202251IPR001471AP2/ERF domain
PRINTSPR003675.7E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
FPKMENFMHK ENYPSYFHGL ATGSKFLGDQ VTWGALSNAS CQDDSSVESS SSAEEACGAN  60
LINKIPGFVK RDVVKEKNSS IPFVSGFDSV PVNFLESFPK LNRQAAANQG SPMLNPSAAA  120
DDDSLGNKDT SFTQLPQSSN EWLKMNQSLA NYSSKGFGDY WLSTIKTQPM KYTGRKLQSQ  180
HHHHQKCNSL EATAMASPGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEEAAMA  240
YDTAAYMLRG EYAHLNFPER KHQLKANSLN GNTATLLEAK LQALSHQKPN NDQQQQQQKQ  300
APTTKKNNIS HQENTSNTNK KLKGILESKV VIGSHHQELV MENKKTHHHQ EVLDVDAVQL  360
SRMPSLDMDT IWDSLLVPDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20197260165ATERF1
3gcc_A1e-20197260165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040367.10.0ethylene-responsive transcription factor ERF062
TrEMBLV4S5S20.0V4S5S2_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006420915.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.17e-64ERF family protein