PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006957m
Common NameCICLE_v10006957mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21428.4 Da    PI: 10.0307
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006957mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.84.9e-171561147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     k+ie++  r +tfskRr gi KKA+EL +L++ e+a+++fs++gk +
  Ciclev10006957m 15 KKIESEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61
                     689*****************************************855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-23781IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.394767IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-26766IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-17929IPR002100Transcription factor, MADS-box
PfamPF003192.6E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MADKKTKGRQ KIEMKKIESE DGRLITFSKR RSGIYKKASE LVTLTGSEIA ILVFSQSGKP  60
FSFGHPSIEA VANRFVGLNQ AANDNTHPLA EAHRQVRINE LNHQHNELLR QLDEEKEREK  120
VLKQMRRGKE TQPRWWETSV DELNHQELLQ MDATIDNLHK SFLAKLNEKT TAASSSMAPP  180
MYFYHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A7e-137791688PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B7e-137791688PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421336.11e-137agamous-like MADS-box protein AGL62
TrEMBLV4SC771e-136V4SC77_9ROSI; Uncharacterized protein
STRINGXP_006421336.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-39AGAMOUS-like 61