PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006914m | ||||||||
Common Name | CICLE_v10006914mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 30625.5 Da PI: 9.3938 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.3e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Ciclev10006914m 17 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Ciclev10006914m 70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.074 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-12 | 19 | 64 | No hit | No description |
SMART | SM00717 | 1.4E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.35 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.05E-10 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMGAQMGWGI IDEGWRKGPW TAEEDRLLIE YVRLHGEGRW NSVARLAGLR RNGKSCRLRW 60 VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK 120 ISSDNTDKAK NRLLKRQQFH QQQQHQHQHQ HQQQDMQLNQ LDLKRIMFLL DESEHRVPYI 180 PQAPRPEFMG YHPNTITDQD QQANNFFYNW MPNGNNNSAI MTEPSNEEIL WDGLWNLDDF 240 GAAACATSKA SFHNLVAPFC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 17 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420401.2 | 0.0 | transcription factor MYB2 | ||||
TrEMBL | V4S9P5 | 0.0 | V4S9P5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420401.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 4e-92 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006914m |
Entrez Gene | 18032378 |