PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006834m
Common NameCICLE_v10006834mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 621aa    MW: 67246.4 Da    PI: 9.1523
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006834mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.81.6e-25159212155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kp++ Wt  LH+rF++a++++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Ciclev10006834m 159 KPKVAWTDSLHNRFLQAIRHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
                      799******************.********************************6 PP
2Response_reg585.4e-2038429109
                      ESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  29 addgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      ++ + eal++++ ++ +Dl+++D+ mp+m+G+el kei+ee  +lp++v+++ + e+ + +al  G+  ++ Kp +p++l +
  Ciclev10006834m   3 VTRPVEALATVRIQRdIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKN 84 
                      5667789999976666***************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.639190IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.95E-20190No hitNo description
Gene3DG3DSA:3.40.50.23003.1E-24297No hitNo description
SuperFamilySSF521722.28E-22293IPR011006CheY-like superfamily
PfamPF000721.5E-16484IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466897.7E-19156216IPR009057Homeodomain-like
PROSITE profilePS5129412.924156215IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-26156216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25159212IPR006447Myb domain, plants
PfamPF002492.4E-6161211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
VTVTRPVEAL ATVRIQRDID LVVTDLHMPE MNGIELQKEI NEEFTHLPVM VMSSDDRESV  60
IMKALASGVA FYILKPLNPD DLKNVWQYAM TYKKAKSISI DEIGSFELAG FSAGKFSLDD  120
IVSRSSVNER NKNNKDSKRK ASKKDKGKQT KQNATAPKKP KVAWTDSLHN RFLQAIRHIG  180
LEKAVPKKIL EFMNVPGLTR ENVASHLQKY RIFLKRVAEQ GASAMGKNLA LRSSFAAGHV  240
SMMLQEAHEF SQVRDKQQQM RTSAFLPGYG SGVSALNGTT FGSIGFPSLG ASSSSSVPQL  300
GLMGNQANFP QLLFGNTRNP LYKANSAGTT CGSSGSNNME ANPLSRGGLA AGLMNQMYQQ  360
KSQSRPNPYD NDNIGASSSK GFGISGWSSS SNTSGLDQNM GTIRNNTYSN YAGIRLNDDG  420
ELIPAGQTSL INGSGLNGGY GLITGTSGIM ANAAFGHLTP GASSSSARFD NATYQIPSAF  480
AGVNEQENTS MLSQLSSQQQ YGHGNNAQND FTNFAPINNA SVNGKTAQPE RFGEGIDLVD  540
LLFDPSDYQF LFQLLEIEDV SDPELSSNAD PLNGYYPSFD QNANQYYTAF NKLRQHLKLI  600
LMVLCTRSSK AAKTLSISLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-24155218164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044408.10.0putative two-component response regulator ARR21
TrEMBLV4S8980.0V4S898_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006421850.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.12e-45response regulator 13