PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G27070.1
Common NameARR13, RR13, T20P8.12
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 575aa    MW: 65323.2 Da    PI: 9.2857
Description response regulator 13
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G27070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.86.7e-20225278155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+++ Wt+ L + F++a++++ G +k +Pk+il +m+v+ Lt+e+v+SHLQkYRl
  AT2G27070.1 225 KKKIWWTNPLQDLFLQAIQHI-GYDKVVPKKILAIMNVPYLTRENVASHLQKYRL 278
                  67899****************.********************************7 PP
2Response_reg76.11.3e-25181281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   v++vdD++++++++ ++lek++y+e++  ++d +++al +lk+++  +Dli++D  mpgm+Gl+l k+i++e  +l ++v++  ++++  +e l+ G
   AT2G27070.1  18 VMVVDDNRVFLDIWSRMLEKSKYREITviAVDYPKKALSTLKNQRdnIDLIITDYYMPGMNGLQLKKQITQEFGNLSVLVMS--SDPNKEEESLSCG 112
                   89*********************98887799**********999999************************999******99..5666889****** PP

                   ESEEEESS--HHHHHH CS
  Response_reg  94 akdflsKpfdpeelvk 109
                   a++f+ Kp++p +l k
   AT2G27070.1 113 AMGFIPKPIAPTDLPK 128
                   ************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-2615139No hitNo description
SuperFamilySSF521726.55E-2416142IPR011006CheY-like superfamily
SMARTSM004485.7E-1916130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.71117134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2218129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.11E-2119126No hitNo description
SuperFamilySSF466898.42E-17223282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-21224282IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-26225279IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0000156Molecular Functionphosphorelay response regulator activity
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000036anatomyleaf vascular system
PO:0004723anatomysepal vascular system
PO:0005660anatomyhydathode
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAFAQSVYNQ SSVLKINVMV VDDNRVFLDI WSRMLEKSKY REITVIAVDY PKKALSTLKN  60
QRDNIDLIIT DYYMPGMNGL QLKKQITQEF GNLSVLVMSS DPNKEEESLS CGAMGFIPKP  120
IAPTDLPKIY QFALTYKRNG KSTLSTEQNQ KDANVSVPQQ IMLVPEQAYV LKTKKKNCSS  180
KSDTRTVNST NVSHVSTNGS RKNRKRKPKG GPSDDGESLS QPPKKKKIWW TNPLQDLFLQ  240
AIQHIGYDKV VPKKILAIMN VPYLTRENVA SHLQKYRLFV KRVVHQGRFS MLSDRGKDSM  300
FRQTHIKEPY VNYYTPSTSW YETSLNNRSF YSESVHGHSR LLSEAREPVR YNQMSYNYMN  360
RNISFENQPS QNEETRTVFE PPVMANKISQ TSQVLGFGQL GPSAISGHNF NTNMMSSYGS  420
LTPNQPGTSH FSYGMQSVLN NENATYNPQP PANATTQPNL DELPQLENLN LYNDLGNTSE  480
LPYNISNFQS DDNKKQGEED GDWTFVNINQ DQSNGESSNT IATPETNTPN FNINPNQNQG  540
QAVPEFTDWS FLDQQPRRLG IRIGYFGFKF SGLEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16224283463ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204226KRKPKGGPSDDGESLSQPPKKKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184013140.0
Genevisible250612_s_at1e-138
Expression AtlasAT2G27070-
AtGenExpressAT2G27070-
Functional Description ? help Back to Top
Source Description
TAIRmember of Response Regulator: B- Type
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G27070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G27070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0056230.0AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318296.10.0response regulator 13
SwissprotQ9ZVD30.0ARR13_ARATH; Putative two-component response regulator ARR13
TrEMBLD7M0G70.0D7M0G7_ARALL; Two-component response regulator
STRINGAT2G27070.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Hwang I,Sheen J
    Two-component circuitry in Arabidopsis cytokinin signal transduction.
    Nature, 2001. 413(6854): p. 383-9
    [PMID:11574878]
  3. Hwang I,Chen HC,Sheen J
    Two-component signal transduction pathways in Arabidopsis.
    Plant Physiol., 2002. 129(2): p. 500-15
    [PMID:12068096]
  4. Imamura A,Kiba T,Tajima Y,Yamashino T,Mizuno T
    In vivo and in vitro characterization of the ARR11 response regulator implicated in the His-to-Asp phosphorelay signal transduction in Arabidopsis thaliana.
    Plant Cell Physiol., 2003. 44(2): p. 122-31
    [PMID:12610214]
  5. Heyl A,Schm
    Cytokinin signal perception and transduction.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 480-8
    [PMID:12972049]
  6. Hoth S, et al.
    Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana.
    FEBS Lett., 2003. 554(3): p. 373-80
    [PMID:14623097]
  7. Pischke MS,Huttlin EL,Hegeman AD,Sussman MR
    A transcriptome-based characterization of habituation in plant tissue culture.
    Plant Physiol., 2006. 140(4): p. 1255-78
    [PMID:16489130]
  8. Manzano C,Abraham Z,L
    Identification of ubiquitinated proteins in Arabidopsis.
    Plant Mol. Biol., 2008. 68(1-2): p. 145-58
    [PMID:18535787]